PlantSME Plant secondary metabolism enzyme database

Sclerocarya birrea (sclerocarya_birrea)

Imported from atlas release summary for Sclerocarya birrea.

1306
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.4% Alkaloid pathway 21.75% Phenylpropanoid pathway 19.68% Flavonoid pathway 15.54% Rosmarinic acid pathway 7.27% Steroid pathway 6.36%
Family Distribution
C4H 6.48% C3'H/CYP98A 6.13% UGT 5.1% 7DLGT 4.69% BAHD 4.58% UFGT 4.29% IFS 4.21% CYP76 4.18%
Other Families 60.34%
More Families (98)
POD 126 3.63% T3O 107 3.08% 4CL 99 2.85% DWF4/CYP90B1 99 2.85% F3H 77 2.22% BR6OX2/CYP85A2 68 1.96% F3'H/CYP75B 67 1.93% CAS 58 1.67% CAD 56 1.61% NMT 55 1.58% CODM/T6ODM 52 1.5% TPS 50 1.44% GES 47 1.35% G8O/G8H 46 1.32% CYP71 42 1.21% SMT1/SMT2/SMT3 39 1.12% F5H/CYP84A 38 1.09% CSE 38 1.09% H6H 37 1.07% FNS 37 1.07% IFR 36 1.04% F3'5'H/CYP75A 34 0.98% LAC 34 0.98% TRI/TRII 32 0.92% HCT 31 0.89% STR 30 0.86% 7DLH 30 0.86% T16H 28 0.81% PYKS 28 0.81% SLS 27 0.78% IO 27 0.78% CYP90D1 26 0.75% BR6OX1/CYP85A1 26 0.75% SGD 25 0.72% COMT 25 0.72% TAT 22 0.63% PMT 20 0.58% GS 20 0.58% RAS 20 0.58% CPD/CYP90A1 17 0.49% CYP719 16 0.46% NCS 16 0.46% CHS 16 0.46% 16OMT 15 0.43% ANS/LDOX 15 0.43% CCR 14 0.4% COR 13 0.37% CNMT 12 0.35% LAMT 12 0.35% DFR 12 0.35% ANR 11 0.32% CYP51G1 10 0.29% CYP80B1 9 0.26% 8HGO 9 0.26% PAL 9 0.26% HPPR 8 0.23% ROT3/CYP90C1 8 0.23% AACT 8 0.23% FPPS 8 0.23% DET2 7 0.2% 6OMT_4OMT_SOMT 5 0.14% MPO 5 0.14% TYDC_DDC 5 0.14% CPR 5 0.14% GGPPS 5 0.14% ODC 4 0.12% CCoAOMT 4 0.12% SQE 4 0.12% SQS/FDFT1 4 0.12% ISY 3 0.09% CYP80F1 3 0.09% BBE 3 0.09% CHI 3 0.09% SMO1/SMO2 3 0.09% CMK/IspE 3 0.09% MVD 3 0.09% MVK 3 0.09% FLS 2 0.06% HMGS 2 0.06% HMGR 2 0.06% DXR 2 0.06% PMK 2 0.06% TDC 1 0.03% ADC 1 0.03% XMT_MXMT_DXMT 1 0.03% FK 1 0.03% CPI1 1 0.03% HYD1 1 0.03% DWF5 1 0.03% DWF7 1 0.03% DWF1 1 0.03% HDS/IspG 1 0.03% MDS/IspF 1 0.03% DXS 1 0.03% IDI 1 0.03% MCT/IspD 1 0.03% GPPS 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 384 17 UGT (140) View species results
Alkaloid pathway 284 24 7DLGT (58) View species results
Phenylpropanoid pathway 257 12 POD (111) View species results
Flavonoid pathway 203 13 UFGT (134) View species results
Rosmarinic acid pathway 95 7 C4H (42) View species results
Steroid pathway 83 10 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1457 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 210 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Gene Pathway Family Confidence Status Best Target
Sbirscaffold102_cov3260002810 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold1069_cov3330005580 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold1212_cov3400014210 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold1370_cov3330023470 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Sbirscaffold1370_cov3330023480 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Sbirscaffold1492_cov3190029740 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold1493_cov3140030640 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold1626_cov3160037430 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold1991_cov3180055080 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold19_cov3440055820 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold25_cov3460070390 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold3223_cov3520087450 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold349_cov3390091510 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold406_cov3420102360 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold406_cov3420103120 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold4183_cov3180107290 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Sbirscaffold438_cov3330110290 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold43_cov3150110520 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Sbirscaffold4_cov3400115560 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Sbirscaffold535_cov3360121670 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold569_cov3360127290 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold569_cov3360127320 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold57_cov3190129490 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold59890_cov3080137200 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold59925_cov3350140470 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold59955_cov3220145100 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold59974_cov3250147530 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold60009_cov3420149210 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold60135_cov3100154680 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Sbirscaffold647_cov3300159830 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR