PlantSME Plant secondary metabolism enzyme database

Sclerocarya birrea (sclerocarya_birrea)

Imported from atlas release summary for Sclerocarya birrea.

1306
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.4% Alkaloid pathway 21.75% Phenylpropanoid pathway 19.68% Flavonoid pathway 15.54% Rosmarinic acid pathway 7.27% Steroid pathway 6.36%
Family Distribution
C4H 6.48% C3'H/CYP98A 6.13% UGT 5.1% 7DLGT 4.69% BAHD 4.58% UFGT 4.29% IFS 4.21% CYP76 4.18%
Other Families 60.34%
More Families (98)
POD 126 3.63% T3O 107 3.08% 4CL 99 2.85% DWF4/CYP90B1 99 2.85% F3H 77 2.22% BR6OX2/CYP85A2 68 1.96% F3'H/CYP75B 67 1.93% CAS 58 1.67% CAD 56 1.61% NMT 55 1.58% CODM/T6ODM 52 1.5% TPS 50 1.44% GES 47 1.35% G8O/G8H 46 1.32% CYP71 42 1.21% SMT1/SMT2/SMT3 39 1.12% F5H/CYP84A 38 1.09% CSE 38 1.09% H6H 37 1.07% FNS 37 1.07% IFR 36 1.04% F3'5'H/CYP75A 34 0.98% LAC 34 0.98% TRI/TRII 32 0.92% HCT 31 0.89% STR 30 0.86% 7DLH 30 0.86% T16H 28 0.81% PYKS 28 0.81% SLS 27 0.78% IO 27 0.78% CYP90D1 26 0.75% BR6OX1/CYP85A1 26 0.75% SGD 25 0.72% COMT 25 0.72% TAT 22 0.63% PMT 20 0.58% GS 20 0.58% RAS 20 0.58% CPD/CYP90A1 17 0.49% CYP719 16 0.46% NCS 16 0.46% CHS 16 0.46% 16OMT 15 0.43% ANS/LDOX 15 0.43% CCR 14 0.4% COR 13 0.37% CNMT 12 0.35% LAMT 12 0.35% DFR 12 0.35% ANR 11 0.32% CYP51G1 10 0.29% CYP80B1 9 0.26% 8HGO 9 0.26% PAL 9 0.26% HPPR 8 0.23% ROT3/CYP90C1 8 0.23% AACT 8 0.23% FPPS 8 0.23% DET2 7 0.2% 6OMT_4OMT_SOMT 5 0.14% MPO 5 0.14% TYDC_DDC 5 0.14% CPR 5 0.14% GGPPS 5 0.14% ODC 4 0.12% CCoAOMT 4 0.12% SQE 4 0.12% SQS/FDFT1 4 0.12% ISY 3 0.09% CYP80F1 3 0.09% BBE 3 0.09% CHI 3 0.09% SMO1/SMO2 3 0.09% CMK/IspE 3 0.09% MVD 3 0.09% MVK 3 0.09% FLS 2 0.06% HMGS 2 0.06% HMGR 2 0.06% DXR 2 0.06% PMK 2 0.06% TDC 1 0.03% ADC 1 0.03% XMT_MXMT_DXMT 1 0.03% FK 1 0.03% CPI1 1 0.03% HYD1 1 0.03% DWF5 1 0.03% DWF7 1 0.03% DWF1 1 0.03% HDS/IspG 1 0.03% MDS/IspF 1 0.03% DXS 1 0.03% IDI 1 0.03% MCT/IspD 1 0.03% GPPS 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 384 17 UGT (140) View species results
Alkaloid pathway 284 24 7DLGT (58) View species results
Phenylpropanoid pathway 257 12 POD (111) View species results
Flavonoid pathway 203 13 UFGT (134) View species results
Rosmarinic acid pathway 95 7 C4H (42) View species results
Steroid pathway 83 10 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1457 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 210 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
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Gene Pathway Family Confidence Status Best Target
Sbirscaffold1185_cov3530009690 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Sbirscaffold1195_cov3300012900 Terpenoid FPPS medium borderline FPPS__00005__sp_P34802_GGPP1_ARATH
Sbirscaffold1309_cov3380017990 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Sbirscaffold2130_cov3280062330 Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Sbirscaffold317_cov3140087070 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
Sbirscaffold406_cov3420102400 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
Sbirscaffold59931_cov3330141510 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Sbirscaffold60011_cov3430150570 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC