PlantSME Plant secondary metabolism enzyme database

Sclerocarya birrea (sclerocarya_birrea)

Imported from atlas release summary for Sclerocarya birrea.

1306
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.4% Alkaloid pathway 21.75% Phenylpropanoid pathway 19.68% Flavonoid pathway 15.54% Rosmarinic acid pathway 7.27% Steroid pathway 6.36%
Family Distribution
C4H 6.48% C3'H/CYP98A 6.13% UGT 5.1% 7DLGT 4.69% BAHD 4.58% UFGT 4.29% IFS 4.21% CYP76 4.18%
Other Families 60.34%
More Families (98)
POD 126 3.63% T3O 107 3.08% 4CL 99 2.85% DWF4/CYP90B1 99 2.85% F3H 77 2.22% BR6OX2/CYP85A2 68 1.96% F3'H/CYP75B 67 1.93% CAS 58 1.67% CAD 56 1.61% NMT 55 1.58% CODM/T6ODM 52 1.5% TPS 50 1.44% GES 47 1.35% G8O/G8H 46 1.32% CYP71 42 1.21% SMT1/SMT2/SMT3 39 1.12% F5H/CYP84A 38 1.09% CSE 38 1.09% H6H 37 1.07% FNS 37 1.07% IFR 36 1.04% F3'5'H/CYP75A 34 0.98% LAC 34 0.98% TRI/TRII 32 0.92% HCT 31 0.89% STR 30 0.86% 7DLH 30 0.86% T16H 28 0.81% PYKS 28 0.81% SLS 27 0.78% IO 27 0.78% CYP90D1 26 0.75% BR6OX1/CYP85A1 26 0.75% SGD 25 0.72% COMT 25 0.72% TAT 22 0.63% PMT 20 0.58% GS 20 0.58% RAS 20 0.58% CPD/CYP90A1 17 0.49% CYP719 16 0.46% NCS 16 0.46% CHS 16 0.46% 16OMT 15 0.43% ANS/LDOX 15 0.43% CCR 14 0.4% COR 13 0.37% CNMT 12 0.35% LAMT 12 0.35% DFR 12 0.35% ANR 11 0.32% CYP51G1 10 0.29% CYP80B1 9 0.26% 8HGO 9 0.26% PAL 9 0.26% HPPR 8 0.23% ROT3/CYP90C1 8 0.23% AACT 8 0.23% FPPS 8 0.23% DET2 7 0.2% 6OMT_4OMT_SOMT 5 0.14% MPO 5 0.14% TYDC_DDC 5 0.14% CPR 5 0.14% GGPPS 5 0.14% ODC 4 0.12% CCoAOMT 4 0.12% SQE 4 0.12% SQS/FDFT1 4 0.12% ISY 3 0.09% CYP80F1 3 0.09% BBE 3 0.09% CHI 3 0.09% SMO1/SMO2 3 0.09% CMK/IspE 3 0.09% MVD 3 0.09% MVK 3 0.09% FLS 2 0.06% HMGS 2 0.06% HMGR 2 0.06% DXR 2 0.06% PMK 2 0.06% TDC 1 0.03% ADC 1 0.03% XMT_MXMT_DXMT 1 0.03% FK 1 0.03% CPI1 1 0.03% HYD1 1 0.03% DWF5 1 0.03% DWF7 1 0.03% DWF1 1 0.03% HDS/IspG 1 0.03% MDS/IspF 1 0.03% DXS 1 0.03% IDI 1 0.03% MCT/IspD 1 0.03% GPPS 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 384 17 UGT (140) View species results
Alkaloid pathway 284 24 7DLGT (58) View species results
Phenylpropanoid pathway 257 12 POD (111) View species results
Flavonoid pathway 203 13 UFGT (134) View species results
Rosmarinic acid pathway 95 7 C4H (42) View species results
Steroid pathway 83 10 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1457 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 210 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFR
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Gene Pathway Family Confidence Status
Sbirscaffold1127_cov2940007880 Flavonoid IFR low borderline
Sbirscaffold1188_cov3300010680 Flavonoid IFR low borderline
Sbirscaffold1212_cov3400014030 Flavonoid IFR high pass
Sbirscaffold131_cov3440019100 Flavonoid IFR high pass
Sbirscaffold131_cov3440021730 Flavonoid IFR medium borderline
Sbirscaffold1365_cov2980023280 Flavonoid IFR low borderline
Sbirscaffold147_cov3280027940 Flavonoid IFR medium pass
Sbirscaffold1555_cov3060032420 Flavonoid IFR high pass
Sbirscaffold1606_cov3440034910 Flavonoid IFR low borderline
Sbirscaffold17_cov3130042680 Flavonoid IFR high pass
Sbirscaffold1852_cov2930048860 Flavonoid IFR high pass
Sbirscaffold19_cov3440057310 Flavonoid IFR low borderline
Sbirscaffold19_cov3440057890 Flavonoid IFR low borderline
Sbirscaffold2489_cov3240068270 Flavonoid IFR low borderline
Sbirscaffold2691_cov2810072270 Flavonoid IFR high pass
Sbirscaffold3002_cov3160078880 Flavonoid IFR low borderline
Sbirscaffold303_cov3370079330 Flavonoid IFR low borderline
Sbirscaffold3136_cov1840085830 Flavonoid IFR medium pass
Sbirscaffold349_cov3390091280 Flavonoid IFR low borderline
Sbirscaffold3774_cov3190094700 Flavonoid IFR low borderline
Sbirscaffold3_cov3440097380 Flavonoid IFR low borderline
Sbirscaffold3_cov3440099860 Flavonoid IFR low borderline
Sbirscaffold520_cov3340118240 Flavonoid IFR low borderline
Sbirscaffold534_cov1910121430 Flavonoid IFR high pass
Sbirscaffold561_cov3230125340 Flavonoid IFR low borderline
Sbirscaffold569_cov3360127430 Flavonoid IFR low borderline
Sbirscaffold59152_cov3070131340 Flavonoid IFR medium pass
Sbirscaffold59935_cov3080142490 Flavonoid IFR low borderline
Sbirscaffold60054_cov3400152480 Flavonoid IFR low borderline
Sbirscaffold6513_cov3190160410 Flavonoid IFR low borderline
Sbirscaffold655_cov2890160950 Flavonoid IFR high pass
Sbirscaffold832_cov3390171740 Flavonoid IFR low borderline
Sbirscaffold872_cov3330172900 Flavonoid IFR medium pass
Sbirscaffold872_cov3330173400 Flavonoid IFR low borderline
Sbirscaffold88_cov3380176860 Flavonoid IFR low borderline
Sbirscaffold92_cov3350181340 Flavonoid IFR low borderline