Sclerocarya birrea (sclerocarya_birrea)
Imported from atlas release summary for Sclerocarya birrea.
1306
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1306
Candidate Genes
C4H
6.48%
C3'H/CYP98A
6.13%
UGT
5.1%
7DLGT
4.69%
BAHD
4.58%
UFGT
4.29%
IFS
4.21%
CYP76
4.18%
Other Families
60.34%
More Families (98)
POD
126
3.63%
T3O
107
3.08%
4CL
99
2.85%
DWF4/CYP90B1
99
2.85%
F3H
77
2.22%
BR6OX2/CYP85A2
68
1.96%
F3'H/CYP75B
67
1.93%
CAS
58
1.67%
CAD
56
1.61%
NMT
55
1.58%
CODM/T6ODM
52
1.5%
TPS
50
1.44%
GES
47
1.35%
G8O/G8H
46
1.32%
CYP71
42
1.21%
SMT1/SMT2/SMT3
39
1.12%
F5H/CYP84A
38
1.09%
CSE
38
1.09%
H6H
37
1.07%
FNS
37
1.07%
IFR
36
1.04%
F3'5'H/CYP75A
34
0.98%
LAC
34
0.98%
TRI/TRII
32
0.92%
HCT
31
0.89%
STR
30
0.86%
7DLH
30
0.86%
T16H
28
0.81%
PYKS
28
0.81%
SLS
27
0.78%
IO
27
0.78%
CYP90D1
26
0.75%
BR6OX1/CYP85A1
26
0.75%
SGD
25
0.72%
COMT
25
0.72%
TAT
22
0.63%
PMT
20
0.58%
GS
20
0.58%
RAS
20
0.58%
CPD/CYP90A1
17
0.49%
CYP719
16
0.46%
NCS
16
0.46%
CHS
16
0.46%
16OMT
15
0.43%
ANS/LDOX
15
0.43%
CCR
14
0.4%
COR
13
0.37%
CNMT
12
0.35%
LAMT
12
0.35%
DFR
12
0.35%
ANR
11
0.32%
CYP51G1
10
0.29%
CYP80B1
9
0.26%
8HGO
9
0.26%
PAL
9
0.26%
HPPR
8
0.23%
ROT3/CYP90C1
8
0.23%
AACT
8
0.23%
FPPS
8
0.23%
DET2
7
0.2%
6OMT_4OMT_SOMT
5
0.14%
MPO
5
0.14%
TYDC_DDC
5
0.14%
CPR
5
0.14%
GGPPS
5
0.14%
ODC
4
0.12%
CCoAOMT
4
0.12%
SQE
4
0.12%
SQS/FDFT1
4
0.12%
ISY
3
0.09%
CYP80F1
3
0.09%
BBE
3
0.09%
CHI
3
0.09%
SMO1/SMO2
3
0.09%
CMK/IspE
3
0.09%
MVD
3
0.09%
MVK
3
0.09%
FLS
2
0.06%
HMGS
2
0.06%
HMGR
2
0.06%
DXR
2
0.06%
PMK
2
0.06%
TDC
1
0.03%
ADC
1
0.03%
XMT_MXMT_DXMT
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
HYD1
1
0.03%
DWF5
1
0.03%
DWF7
1
0.03%
DWF1
1
0.03%
HDS/IspG
1
0.03%
MDS/IspF
1
0.03%
DXS
1
0.03%
IDI
1
0.03%
MCT/IspD
1
0.03%
GPPS
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 384 | 17 | UGT (140) | View species results |
| Alkaloid pathway | 284 | 24 | 7DLGT (58) | View species results |
| Phenylpropanoid pathway | 257 | 12 | POD (111) | View species results |
| Flavonoid pathway | 203 | 13 | UFGT (134) | View species results |
| Rosmarinic acid pathway | 95 | 7 | C4H (42) | View species results |
| Steroid pathway | 83 | 10 | CAS (47) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1457 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 210 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Sbirscaffold561_cov3230125900 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold57_cov3190129230 | Rosmarinic Acid | C4H | medium | pass |
| Sbirscaffold590_cov3110130860 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold590_cov3110130920 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold590_cov3110131010 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold59559_cov2790132770 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold59860_cov3270134630 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold59865_cov2370135380 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold59865_cov2370135390 | Rosmarinic Acid | C4H | medium | pass |
| Sbirscaffold59867_cov3330136090 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold59914_cov3540139460 | Rosmarinic Acid | C4H | medium | pass |
| Sbirscaffold59916_cov3220139620 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold59916_cov3220139650 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold59931_cov3330140860 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold59935_cov3080142430 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold59940_cov3400142750 | Rosmarinic Acid | C4H | medium | pass |
| Sbirscaffold59953_cov2960144550 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold59953_cov2960144560 | Rosmarinic Acid | C4H | medium | pass |
| Sbirscaffold59953_cov2960144570 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold59953_cov2960144580 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold59953_cov2960144600 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold59953_cov2960144620 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold59953_cov2960144630 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold59953_cov2960144650 | Rosmarinic Acid | C4H | medium | pass |
| Sbirscaffold59972_cov2860146930 | Rosmarinic Acid | C4H | medium | pass |
| Sbirscaffold59979_cov3330148220 | Rosmarinic Acid | C4H | medium | pass |
| Sbirscaffold59979_cov3330148250 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold59979_cov3330148260 | Rosmarinic Acid | C4H | medium | pass |
| Sbirscaffold60004_cov2970148780 | Rosmarinic Acid | C4H | medium | pass |
| Sbirscaffold60009_cov3420149100 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold60009_cov3420149130 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold60012_cov2870151160 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold60061_cov3280153240 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold60113_cov3740154430 | Rosmarinic Acid | C4H | medium | pass |
| Sbirscaffold60160_cov3510155200 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold60170_cov3280155900 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold60194_cov3480156630 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold60_cov3090156940 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold6306_cov2960157670 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold647_cov3300159150 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold647_cov3300159170 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold647_cov3300159200 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold652_cov3060160620 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold7228_cov2200163450 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold755_cov3360166760 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold761_cov3060168490 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold761_cov3060168510 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold817_cov3430169900 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold832_cov3390171620 | Rosmarinic Acid | C4H | medium | pass |
| Sbirscaffold87_cov3360173620 | Rosmarinic Acid | C4H | low | borderline |