Sclerocarya birrea (sclerocarya_birrea)
Imported from atlas release summary for Sclerocarya birrea.
1530
Candidate Protein Records
1306
Pathway-Level Records
3472
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3472
Family-Level Calls
C4H
6.48%
C3'H/CYP98A
6.13%
UGT
5.1%
7DLGT
4.69%
BAHD
4.58%
UFGT
4.29%
IFS
4.21%
CYP76
4.18%
Other Families
60.34%
More Families (98)
POD
126
3.63%
T3O
107
3.08%
4CL
99
2.85%
DWF4/CYP90B1
99
2.85%
F3H
77
2.22%
BR6OX2/CYP85A2
68
1.96%
F3'H/CYP75B
67
1.93%
CAS
58
1.67%
CAD
56
1.61%
NMT
55
1.58%
CODM/T6ODM
52
1.5%
TPS
50
1.44%
GES
47
1.35%
G8O/G8H
46
1.32%
CYP71
42
1.21%
SMT1/SMT2/SMT3
39
1.12%
F5H/CYP84A
38
1.09%
CSE
38
1.09%
H6H
37
1.07%
FNS
37
1.07%
IFR
36
1.04%
F3'5'H/CYP75A
34
0.98%
LAC
34
0.98%
TRI/TRII
32
0.92%
HCT
31
0.89%
STR
30
0.86%
7DLH
30
0.86%
T16H
28
0.81%
PYKS
28
0.81%
SLS
27
0.78%
IO
27
0.78%
CYP90D1
26
0.75%
BR6OX1/CYP85A1
26
0.75%
SGD
25
0.72%
COMT
25
0.72%
TAT
22
0.63%
PMT
20
0.58%
GS
20
0.58%
RAS
20
0.58%
CPD/CYP90A1
17
0.49%
CYP719
16
0.46%
NCS
16
0.46%
CHS
16
0.46%
16OMT
15
0.43%
ANS/LDOX
15
0.43%
CCR
14
0.4%
COR
13
0.37%
CNMT
12
0.35%
LAMT
12
0.35%
DFR
12
0.35%
ANR
11
0.32%
CYP51G1
10
0.29%
CYP80B1
9
0.26%
8HGO
9
0.26%
PAL
9
0.26%
HPPR
8
0.23%
ROT3/CYP90C1
8
0.23%
AACT
8
0.23%
FPPS
8
0.23%
DET2
7
0.2%
6OMT_4OMT_SOMT
5
0.14%
MPO
5
0.14%
TYDC_DDC
5
0.14%
CPR
5
0.14%
GGPPS
5
0.14%
ODC
4
0.12%
CCoAOMT
4
0.12%
SQE
4
0.12%
SQS/FDFT1
4
0.12%
ISY
3
0.09%
CYP80F1
3
0.09%
BBE
3
0.09%
CHI
3
0.09%
SMO1/SMO2
3
0.09%
CMK/IspE
3
0.09%
MVD
3
0.09%
MVK
3
0.09%
FLS
2
0.06%
HMGS
2
0.06%
HMGR
2
0.06%
DXR
2
0.06%
PMK
2
0.06%
TDC
1
0.03%
ADC
1
0.03%
XMT_MXMT_DXMT
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
HYD1
1
0.03%
DWF5
1
0.03%
DWF7
1
0.03%
DWF1
1
0.03%
HDS/IspG
1
0.03%
MDS/IspF
1
0.03%
DXS
1
0.03%
IDI
1
0.03%
MCT/IspD
1
0.03%
GPPS
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 384 | 17 | UGT (140) | View species results |
| Alkaloid pathway | 284 | 24 | 7DLGT (58) | View species results |
| Phenylpropanoid pathway | 257 | 12 | POD (111) | View species results |
| Flavonoid pathway | 203 | 13 | UFGT (134) | View species results |
| Rosmarinic acid pathway | 95 | 7 | C4H (42) | View species results |
| Steroid pathway | 83 | 10 | CAS (47) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1457 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 210 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Sbirscaffold647_cov3300159200 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold652_cov3060160620 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold7228_cov2200163450 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold755_cov3360166760 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold761_cov3060168490 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold761_cov3060168510 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold817_cov3430169900 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold832_cov3390171620 | Rosmarinic Acid | C4H | medium | pass |
| Sbirscaffold87_cov3360173620 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold88_cov3380174630 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold92_cov3350180620 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold92_cov3350180720 | Rosmarinic Acid | C4H | medium | pass |
| Sbirscaffold92_cov3350180730 | Rosmarinic Acid | C4H | medium | pass |
| Sbirscaffold92_cov3350180740 | Rosmarinic Acid | C4H | medium | pass |
| Sbirscaffold92_cov3350180750 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold92_cov3350181530 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold92_cov3350183680 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold92_cov3350183810 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold92_cov3350183880 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold9341_cov3930184900 | Rosmarinic Acid | C4H | low | borderline |
| Sbirscaffold970_cov3380186990 | Rosmarinic Acid | C4H | medium | pass |
| Sbirscaffold1719_cov3280040560 | Rosmarinic Acid | CPR | medium | pass |
| Sbirscaffold1877_cov3480050330 | Rosmarinic Acid | CPR | medium | pass |
| Sbirscaffold317_cov3140087030 | Rosmarinic Acid | CPR | low | borderline |
| Sbirscaffold59956_cov3200146510 | Rosmarinic Acid | CPR | low | borderline |
| Sbirscaffold92_cov3350179730 | Rosmarinic Acid | CPR | medium | pass |
| Sbirscaffold537_cov3430124010 | Rosmarinic Acid | HPPR | low | borderline |
| Sbirscaffold557_cov3100125200 | Rosmarinic Acid | HPPR | medium | pass |
| Sbirscaffold557_cov3100125210 | Rosmarinic Acid | HPPR | low | borderline |
| Sbirscaffold755_cov3360166620 | Rosmarinic Acid | HPPR | medium | pass |
| Sbirscaffold755_cov3360166630 | Rosmarinic Acid | HPPR | medium | pass |
| Sbirscaffold755_cov3360166640 | Rosmarinic Acid | HPPR | low | borderline |
| Sbirscaffold755_cov3360166650 | Rosmarinic Acid | HPPR | medium | pass |
| Sbirscaffold755_cov3360166660 | Rosmarinic Acid | HPPR | medium | pass |
| Sbirscaffold1069_cov3330005640 | Rosmarinic Acid | PAL | high | pass |
| Sbirscaffold4_cov3400115160 | Rosmarinic Acid | PAL | high | pass |
| Sbirscaffold59569_cov3280133310 | Rosmarinic Acid | PAL | high | pass |
| Sbirscaffold1014_cov3320001280 | Rosmarinic Acid | RAS | low | borderline |
| Sbirscaffold131_cov3440019290 | Rosmarinic Acid | RAS | medium | pass |
| Sbirscaffold1365_cov2980023140 | Rosmarinic Acid | RAS | low | borderline |
| Sbirscaffold1365_cov2980023150 | Rosmarinic Acid | RAS | medium | pass |
| Sbirscaffold1365_cov2980023170 | Rosmarinic Acid | RAS | low | borderline |
| Sbirscaffold143_cov3320025420 | Rosmarinic Acid | RAS | low | borderline |
| Sbirscaffold1719_cov3280040800 | Rosmarinic Acid | RAS | medium | pass |
| Sbirscaffold179_cov3260042590 | Rosmarinic Acid | RAS | medium | pass |
| Sbirscaffold179_cov3260042600 | Rosmarinic Acid | RAS | low | borderline |
| Sbirscaffold179_cov3260042620 | Rosmarinic Acid | RAS | medium | pass |
| Sbirscaffold1897_cov3120052770 | Rosmarinic Acid | RAS | medium | pass |
| Sbirscaffold19_cov3440057660 | Rosmarinic Acid | RAS | low | borderline |
| Sbirscaffold349_cov3390091760 | Rosmarinic Acid | RAS | low | borderline |