PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

1896
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Slyc01G0040010.1 Steroid BR6OX1/CYP85A1 medium borderline
Slyc02G0009350.1 Steroid BR6OX1/CYP85A1 medium borderline
Slyc02G0013050.1 Steroid BR6OX1/CYP85A1 medium borderline
Slyc03G0019420.1 Steroid BR6OX1/CYP85A1 medium borderline
Slyc03G0019430.1 Steroid BR6OX1/CYP85A1 medium borderline
Slyc03G0019440.1 Steroid BR6OX1/CYP85A1 medium borderline
Slyc03G0023100.1 Steroid BR6OX1/CYP85A1 low borderline
Slyc04G0004650.1 Steroid BR6OX1/CYP85A1 medium borderline
Slyc04G0014990.1 Steroid BR6OX1/CYP85A1 medium borderline
Slyc04G0024820.1 Steroid BR6OX1/CYP85A1 low borderline
Slyc04G0025950.1 Steroid BR6OX1/CYP85A1 medium borderline
Slyc06G0006740.1 Steroid BR6OX1/CYP85A1 medium borderline
Slyc06G0023710.1 Steroid BR6OX1/CYP85A1 medium borderline
Slyc08G0002290.1 Steroid BR6OX1/CYP85A1 medium borderline
Slyc09G0007320.1 Steroid BR6OX1/CYP85A1 medium borderline
Slyc09G0014150.1 Steroid BR6OX1/CYP85A1 medium borderline
Slyc09G0024900.1 Steroid BR6OX1/CYP85A1 medium borderline
Slyc09G0024920.1 Steroid BR6OX1/CYP85A1 medium borderline
Slyc10G0004510.1 Steroid BR6OX1/CYP85A1 medium borderline
Slyc10G0024410.1 Steroid BR6OX1/CYP85A1 medium borderline
Slyc12G0001500.1 Steroid BR6OX1/CYP85A1 medium borderline
Slyc12G0008850.1 Steroid BR6OX1/CYP85A1 low borderline
Slyc01G0003560.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc01G0004330.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc01G0005260.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc01G0021860.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc01G0025820.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc01G0026480.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc01G0028110.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc01G0028490.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc02G0002360.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc02G0031200.1 Steroid BR6OX2/CYP85A2 medium borderline
Slyc03G0004300.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc03G0004310.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc03G0004590.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc03G0008910.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc03G0008930.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc03G0023040.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc03G0026280.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc03G0030220.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc03G0031830.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc04G0002070.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc04G0002080.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc04G0005310.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc04G0012450.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc04G0014450.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc04G0014980.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc04G0016560.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc04G0018690.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc04G0018710.1 Steroid BR6OX2/CYP85A2 low borderline