PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

2234
Candidate Protein Records
1896
Pathway-Level Records
4749
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Slyc02G0020240.1 Alkaloid G8O/G8H medium borderline
Slyc02G0031130.1 Alkaloid G8O/G8H medium borderline
Slyc02G0034630.1 Alkaloid G8O/G8H medium borderline
Slyc03G0008870.1 Alkaloid G8O/G8H low borderline
Slyc03G0010500.1 Alkaloid G8O/G8H medium pass
Slyc03G0023120.1 Alkaloid G8O/G8H low borderline
Slyc04G0012460.1 Alkaloid G8O/G8H medium pass
Slyc04G0016470.1 Alkaloid G8O/G8H medium borderline
Slyc04G0016490.1 Alkaloid G8O/G8H medium borderline
Slyc04G0018020.1 Alkaloid G8O/G8H medium borderline
Slyc04G0024880.1 Alkaloid G8O/G8H medium borderline
Slyc06G0006890.1 Alkaloid G8O/G8H low borderline
Slyc06G0012740.1 Alkaloid G8O/G8H medium borderline
Slyc06G0023710.1 Alkaloid G8O/G8H medium borderline
Slyc06G0025770.1 Alkaloid G8O/G8H medium borderline
Slyc06G0027110.1 Alkaloid G8O/G8H low borderline
Slyc06G0027120.1 Alkaloid G8O/G8H low borderline
Slyc07G0017000.1 Alkaloid G8O/G8H medium borderline
Slyc08G0021060.1 Alkaloid G8O/G8H medium borderline
Slyc08G0021100.1 Alkaloid G8O/G8H medium borderline
Slyc09G0014150.1 Alkaloid G8O/G8H medium borderline
Slyc09G0014160.1 Alkaloid G8O/G8H medium borderline
Slyc09G0015850.1 Alkaloid G8O/G8H medium pass
Slyc09G0024490.1 Alkaloid G8O/G8H medium borderline
Slyc09G0024900.1 Alkaloid G8O/G8H medium borderline
Slyc09G0024920.1 Alkaloid G8O/G8H medium borderline
Slyc09G0024930.1 Alkaloid G8O/G8H medium borderline
Slyc10G0003150.1 Alkaloid G8O/G8H medium borderline
Slyc10G0017770.1 Alkaloid G8O/G8H low borderline
Slyc11G0001730.1 Alkaloid G8O/G8H medium borderline
Slyc12G0012830.1 Alkaloid G8O/G8H medium borderline
Slyc00G0006820.1 Alkaloid GES medium pass
Slyc01G0033250.1 Alkaloid GES medium pass
Slyc01G0033260.1 Alkaloid GES medium pass
Slyc01G0033270.1 Alkaloid GES medium pass
Slyc01G0033280.1 Alkaloid GES medium pass
Slyc01G0033290.1 Alkaloid GES medium pass
Slyc01G0037350.1 Alkaloid GES medium pass
Slyc01G0037360.1 Alkaloid GES medium pass
Slyc01G0037370.1 Alkaloid GES medium pass
Slyc01G0037380.1 Alkaloid GES medium pass
Slyc01G0037390.1 Alkaloid GES medium pass
Slyc01G0037400.1 Alkaloid GES medium pass
Slyc01G0037420.1 Alkaloid GES medium pass
Slyc01G0037440.1 Alkaloid GES medium pass
Slyc01G0037450.1 Alkaloid GES medium pass
Slyc01G0037460.1 Alkaloid GES medium pass
Slyc01G0037470.1 Alkaloid GES medium pass
Slyc01G0037480.1 Alkaloid GES medium pass
Slyc02G0019720.1 Alkaloid GES medium pass