PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

2234
Candidate Protein Records
1896
Pathway-Level Records
4749
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Slyc09G0021540.1 Alkaloid CODM/T6ODM medium borderline
Slyc09G0021550.1 Alkaloid CODM/T6ODM medium borderline
Slyc09G0021580.1 Alkaloid CODM/T6ODM medium borderline
Slyc09G0021590.1 Alkaloid CODM/T6ODM medium borderline
Slyc10G0000370.1 Alkaloid CODM/T6ODM medium borderline
Slyc10G0002770.1 Alkaloid CODM/T6ODM medium borderline
Slyc10G0007560.1 Alkaloid CODM/T6ODM low borderline
Slyc10G0017200.1 Alkaloid CODM/T6ODM medium borderline
Slyc10G0017210.1 Alkaloid CODM/T6ODM medium borderline
Slyc10G0017370.1 Alkaloid CODM/T6ODM medium borderline
Slyc10G0025760.1 Alkaloid CODM/T6ODM medium borderline
Slyc11G0003080.1 Alkaloid CODM/T6ODM medium borderline
Slyc11G0007750.1 Alkaloid CODM/T6ODM medium borderline
Slyc11G0013310.1 Alkaloid CODM/T6ODM medium borderline
Slyc11G0013870.1 Alkaloid CODM/T6ODM low borderline
Slyc11G0023180.1 Alkaloid CODM/T6ODM medium borderline
Slyc11G0023200.1 Alkaloid CODM/T6ODM medium borderline
Slyc11G0023210.1 Alkaloid CODM/T6ODM medium borderline
Slyc12G0001420.1 Alkaloid CODM/T6ODM medium borderline
Slyc12G0005970.1 Alkaloid CODM/T6ODM medium borderline
Slyc12G0014810.1 Alkaloid CODM/T6ODM medium borderline
Slyc00G0002050.1 Alkaloid COR medium pass
Slyc01G0042330.1 Alkaloid COR medium pass
Slyc03G0016860.1 Alkaloid COR medium pass
Slyc03G0016870.1 Alkaloid COR medium pass
Slyc03G0016880.1 Alkaloid COR medium pass
Slyc03G0020670.1 Alkaloid COR medium pass
Slyc04G0002600.1 Alkaloid COR medium pass
Slyc09G0005560.1 Alkaloid COR medium pass
Slyc09G0007490.1 Alkaloid COR medium pass
Slyc12G0015270.1 Alkaloid COR medium pass
Slyc04G0004240.1 Alkaloid CYP719 medium borderline
Slyc04G0014430.1 Alkaloid CYP719 medium borderline
Slyc05G0012820.1 Alkaloid CYP719 medium borderline
Slyc08G0002290.1 Alkaloid CYP719 medium borderline
Slyc08G0003880.1 Alkaloid CYP719 low borderline
Slyc08G0011300.1 Alkaloid CYP719 medium borderline
Slyc12G0008840.1 Alkaloid CYP719 medium borderline
Slyc12G0008850.1 Alkaloid CYP719 medium borderline
Slyc03G0019420.1 Alkaloid CYP80B1 medium borderline
Slyc03G0019430.1 Alkaloid CYP80B1 medium borderline
Slyc04G0024820.1 Alkaloid CYP80B1 medium borderline
Slyc08G0014080.1 Alkaloid CYP80B1 medium borderline
Slyc08G0021110.1 Alkaloid CYP80B1 medium borderline
Slyc10G0017800.1 Alkaloid CYP80B1 medium borderline
Slyc12G0011730.1 Alkaloid CYP80B1 low borderline
Slyc01G0022490.1 Alkaloid CYP80F1 low borderline
Slyc04G0000390.1 Alkaloid CYP80F1 medium borderline
Slyc06G0006740.1 Alkaloid CYP80F1 medium borderline
Slyc02G0008970.1 Alkaloid G8O/G8H medium borderline