PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

2234
Candidate Protein Records
1896
Pathway-Level Records
4749
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Slyc10G0022490.1 Terpenoid CYP76 medium pass
Slyc10G0024410.1 Terpenoid CYP76 medium pass
Slyc11G0001730.1 Terpenoid CYP76 medium pass
Slyc11G0002700.1 Terpenoid CYP76 medium pass
Slyc11G0012520.1 Terpenoid CYP76 medium borderline
Slyc11G0019430.1 Terpenoid CYP76 medium borderline
Slyc11G0021770.1 Terpenoid CYP76 low borderline
Slyc12G0000200.1 Terpenoid CYP76 low borderline
Slyc12G0008850.1 Terpenoid CYP76 low borderline
Slyc12G0008870.1 Terpenoid CYP76 low borderline
Slyc12G0012830.1 Terpenoid CYP76 medium pass
Slyc12G0015280.1 Terpenoid CYP76 medium borderline
Slyc12G0016750.1 Terpenoid CYP76 low borderline
Slyc12G0016760.1 Terpenoid CYP76 medium borderline
Slyc12G0016770.1 Terpenoid CYP76 medium borderline
Slyc12G0018660.1 Terpenoid CYP76 medium pass
Slyc12G0019720.1 Terpenoid CYP76 medium pass
Slyc12G0019770.1 Terpenoid CYP76 medium pass
Slyc12G0020270.1 Terpenoid CYP76 medium borderline
Slyc01G0011900.1 Terpenoid DXR low borderline
Slyc03G0025600.1 Terpenoid DXR high pass
Slyc01G0017160.1 Terpenoid DXS medium pass
Slyc03G0006190.1 Terpenoid DXS low borderline
Slyc08G0013220.1 Terpenoid DXS medium pass
Slyc11G0004970.1 Terpenoid DXS medium pass
Slyc00G0006660.1 Terpenoid FPPS low borderline
Slyc03G0003650.1 Terpenoid FPPS medium pass
Slyc06G0012730.1 Terpenoid FPPS medium pass
Slyc06G0026480.1 Terpenoid FPPS low borderline
Slyc06G0026500.1 Terpenoid FPPS medium pass
Slyc07G0023470.1 Terpenoid FPPS medium borderline
Slyc08G0000770.1 Terpenoid FPPS medium pass
Slyc08G0000790.1 Terpenoid FPPS medium pass
Slyc10G0000810.1 Terpenoid FPPS medium pass
Slyc10G0000830.1 Terpenoid FPPS medium pass
Slyc10G0024020.1 Terpenoid FPPS medium pass
Slyc10G0024030.1 Terpenoid FPPS medium pass
Slyc12G0007140.1 Terpenoid FPPS medium pass
Slyc02G0025970.1 Terpenoid GGPPS medium borderline
Slyc02G0025980.1 Terpenoid GGPPS medium borderline
Slyc02G0025990.1 Terpenoid GGPPS medium borderline
Slyc04G0025220.1 Terpenoid GGPPS medium borderline
Slyc07G0020640.1 Terpenoid GGPPS medium borderline
Slyc08G0007960.1 Terpenoid GGPPS medium borderline
Slyc09G0003110.1 Terpenoid GGPPS medium borderline
Slyc11G0005380.1 Terpenoid GGPPS medium borderline
Slyc00G0005810.1 Terpenoid GPPS low borderline
Slyc09G0024670.1 Terpenoid GPPS low borderline
Slyc01G0041110.1 Terpenoid HDR/IspH high pass
Slyc11G0021360.1 Terpenoid HDS/IspG high pass