PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

1896
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Slyc12G0003160.1 Rosmarinic Acid 4CL low borderline
Slyc12G0015260.1 Rosmarinic Acid 4CL medium pass
Slyc12G0016050.1 Rosmarinic Acid 4CL low borderline
Slyc12G0020910.1 Rosmarinic Acid 4CL medium pass
Slyc12G0023850.1 Rosmarinic Acid 4CL medium pass
Slyc00G0004180.1 Rosmarinic Acid C4H low borderline
Slyc00G0007670.1 Rosmarinic Acid C4H medium pass
Slyc01G0003530.1 Rosmarinic Acid C4H medium pass
Slyc01G0003540.1 Rosmarinic Acid C4H medium pass
Slyc01G0003560.1 Rosmarinic Acid C4H medium pass
Slyc01G0004330.1 Rosmarinic Acid C4H medium pass
Slyc01G0005260.1 Rosmarinic Acid C4H medium pass
Slyc01G0005490.1 Rosmarinic Acid C4H low borderline
Slyc01G0005930.1 Rosmarinic Acid C4H low borderline
Slyc01G0010940.1 Rosmarinic Acid C4H low borderline
Slyc01G0019760.1 Rosmarinic Acid C4H low borderline
Slyc01G0021860.1 Rosmarinic Acid C4H low borderline
Slyc01G0023320.1 Rosmarinic Acid C4H low borderline
Slyc01G0025750.1 Rosmarinic Acid C4H low borderline
Slyc01G0025780.1 Rosmarinic Acid C4H low borderline
Slyc01G0025800.1 Rosmarinic Acid C4H low borderline
Slyc01G0025810.1 Rosmarinic Acid C4H low borderline
Slyc01G0025820.1 Rosmarinic Acid C4H low borderline
Slyc01G0028110.1 Rosmarinic Acid C4H low borderline
Slyc01G0028490.1 Rosmarinic Acid C4H medium pass
Slyc01G0040950.1 Rosmarinic Acid C4H low borderline
Slyc02G0007040.1 Rosmarinic Acid C4H medium pass
Slyc02G0009010.1 Rosmarinic Acid C4H low borderline
Slyc02G0009350.1 Rosmarinic Acid C4H low borderline
Slyc02G0009370.1 Rosmarinic Acid C4H low borderline
Slyc02G0009380.1 Rosmarinic Acid C4H medium pass
Slyc02G0013050.1 Rosmarinic Acid C4H low borderline
Slyc02G0014070.1 Rosmarinic Acid C4H low borderline
Slyc02G0020240.1 Rosmarinic Acid C4H low borderline
Slyc02G0022000.1 Rosmarinic Acid C4H low borderline
Slyc02G0024720.1 Rosmarinic Acid C4H medium pass
Slyc02G0024890.1 Rosmarinic Acid C4H low borderline
Slyc02G0025080.1 Rosmarinic Acid C4H low borderline
Slyc02G0025560.1 Rosmarinic Acid C4H low borderline
Slyc02G0026170.1 Rosmarinic Acid C4H low borderline
Slyc02G0026180.1 Rosmarinic Acid C4H low borderline
Slyc02G0029900.1 Rosmarinic Acid C4H low borderline
Slyc02G0031140.1 Rosmarinic Acid C4H low borderline
Slyc02G0031150.1 Rosmarinic Acid C4H medium pass
Slyc02G0031160.1 Rosmarinic Acid C4H low borderline
Slyc02G0031200.1 Rosmarinic Acid C4H low borderline
Slyc02G0033180.1 Rosmarinic Acid C4H low borderline
Slyc02G0033920.1 Rosmarinic Acid C4H medium pass
Slyc02G0034630.1 Rosmarinic Acid C4H low borderline
Slyc02G0035700.1 Rosmarinic Acid C4H low borderline