PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

1896
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Slyc03G0003740.1 Rosmarinic Acid C4H low borderline
Slyc03G0004300.1 Rosmarinic Acid C4H low borderline
Slyc03G0004310.1 Rosmarinic Acid C4H low borderline
Slyc03G0004590.1 Rosmarinic Acid C4H medium pass
Slyc03G0004600.1 Rosmarinic Acid C4H low borderline
Slyc03G0008130.1 Rosmarinic Acid C4H low borderline
Slyc03G0008890.1 Rosmarinic Acid C4H medium pass
Slyc03G0008910.1 Rosmarinic Acid C4H low borderline
Slyc03G0008930.1 Rosmarinic Acid C4H low borderline
Slyc03G0010480.1 Rosmarinic Acid C4H low borderline
Slyc03G0017850.1 Rosmarinic Acid C4H low borderline
Slyc03G0019420.1 Rosmarinic Acid C4H low borderline
Slyc03G0019430.1 Rosmarinic Acid C4H low borderline
Slyc03G0019440.1 Rosmarinic Acid C4H low borderline
Slyc03G0021580.1 Rosmarinic Acid C4H low borderline
Slyc03G0022350.1 Rosmarinic Acid C4H low borderline
Slyc03G0022360.1 Rosmarinic Acid C4H low borderline
Slyc03G0023030.1 Rosmarinic Acid C4H medium pass
Slyc03G0023040.1 Rosmarinic Acid C4H medium pass
Slyc03G0023050.1 Rosmarinic Acid C4H low borderline
Slyc03G0023060.1 Rosmarinic Acid C4H medium pass
Slyc03G0023070.1 Rosmarinic Acid C4H medium pass
Slyc03G0023080.1 Rosmarinic Acid C4H medium pass
Slyc03G0023090.1 Rosmarinic Acid C4H medium pass
Slyc03G0023100.1 Rosmarinic Acid C4H low borderline
Slyc03G0023110.1 Rosmarinic Acid C4H medium pass
Slyc03G0023120.1 Rosmarinic Acid C4H low borderline
Slyc03G0023140.1 Rosmarinic Acid C4H medium pass
Slyc03G0023150.1 Rosmarinic Acid C4H low borderline
Slyc03G0023160.1 Rosmarinic Acid C4H medium pass
Slyc03G0023170.1 Rosmarinic Acid C4H medium pass
Slyc03G0023180.1 Rosmarinic Acid C4H medium pass
Slyc03G0026280.1 Rosmarinic Acid C4H low borderline
Slyc03G0026570.1 Rosmarinic Acid C4H medium pass
Slyc03G0030210.1 Rosmarinic Acid C4H low borderline
Slyc03G0030220.1 Rosmarinic Acid C4H medium pass
Slyc03G0031830.1 Rosmarinic Acid C4H low borderline
Slyc03G0033330.1 Rosmarinic Acid C4H low borderline
Slyc03G0034140.1 Rosmarinic Acid C4H low borderline
Slyc03G0034150.1 Rosmarinic Acid C4H medium pass
Slyc04G0000390.1 Rosmarinic Acid C4H low borderline
Slyc04G0000400.1 Rosmarinic Acid C4H low borderline
Slyc04G0002070.1 Rosmarinic Acid C4H low borderline
Slyc04G0002080.1 Rosmarinic Acid C4H medium pass
Slyc04G0004650.1 Rosmarinic Acid C4H low borderline
Slyc04G0005070.1 Rosmarinic Acid C4H medium pass
Slyc04G0005080.1 Rosmarinic Acid C4H medium pass
Slyc04G0005300.1 Rosmarinic Acid C4H low borderline
Slyc04G0005310.1 Rosmarinic Acid C4H low borderline
Slyc04G0010150.1 Rosmarinic Acid C4H low borderline