PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

1896
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Slyc08G0000750.1 Steroid CAS medium pass
Slyc08G0000820.1 Steroid CAS medium pass
Slyc08G0000830.1 Steroid CAS low borderline
Slyc08G0004730.1 Steroid CAS medium pass
Slyc09G0019730.1 Steroid CAS medium pass
Slyc10G0000400.1 Steroid CAS low borderline
Slyc10G0000420.1 Steroid CAS low borderline
Slyc10G0005600.1 Steroid CAS medium pass
Slyc12G0001550.1 Steroid CAS medium pass
Slyc12G0001560.1 Steroid CAS medium pass
Slyc12G0001570.1 Steroid CAS medium pass
Slyc12G0011670.1 Steroid CAS medium pass
Slyc12G0011680.1 Steroid CAS medium pass
Slyc12G0011690.1 Steroid CAS medium pass
Slyc02G0025080.1 Steroid CPD/CYP90A1 medium borderline
Slyc03G0022350.1 Steroid CPD/CYP90A1 low borderline
Slyc03G0022360.1 Steroid CPD/CYP90A1 low borderline
Slyc03G0022370.1 Steroid CPD/CYP90A1 low borderline
Slyc04G0005300.1 Steroid CPD/CYP90A1 low borderline
Slyc04G0005320.1 Steroid CPD/CYP90A1 low borderline
Slyc04G0014430.1 Steroid CPD/CYP90A1 low borderline
Slyc05G0024000.1 Steroid CPD/CYP90A1 medium borderline
Slyc06G0016430.1 Steroid CPD/CYP90A1 medium borderline
Slyc06G0017270.1 Steroid CPD/CYP90A1 medium borderline
Slyc07G0023260.1 Steroid CPD/CYP90A1 medium borderline
Slyc08G0011300.1 Steroid CPD/CYP90A1 medium borderline
Slyc08G0021250.1 Steroid CPD/CYP90A1 low borderline
Slyc09G0024450.1 Steroid CPD/CYP90A1 medium borderline
Slyc10G0017850.1 Steroid CPD/CYP90A1 low borderline
Slyc10G0020550.1 Steroid CPD/CYP90A1 low borderline
Slyc10G0020560.1 Steroid CPD/CYP90A1 low borderline
Slyc10G0022580.1 Steroid CPD/CYP90A1 medium borderline
Slyc11G0001710.1 Steroid CPD/CYP90A1 medium borderline
Slyc12G0023100.1 Steroid CPI1 medium pass
Slyc01G0002920.1 Steroid CYP51G1 medium borderline
Slyc01G0003540.1 Steroid CYP51G1 medium borderline
Slyc02G0007040.1 Steroid CYP51G1 medium borderline
Slyc02G0009380.1 Steroid CYP51G1 medium borderline
Slyc02G0024720.1 Steroid CYP51G1 medium borderline
Slyc03G0004600.1 Steroid CYP51G1 medium borderline
Slyc03G0023030.1 Steroid CYP51G1 medium borderline
Slyc03G0023160.1 Steroid CYP51G1 medium borderline
Slyc04G0016380.1 Steroid CYP51G1 medium borderline
Slyc08G0020990.1 Steroid CYP51G1 medium borderline
Slyc08G0021000.1 Steroid CYP51G1 medium borderline
Slyc08G0021010.1 Steroid CYP51G1 medium borderline
Slyc08G0021130.1 Steroid CYP51G1 medium borderline
Slyc08G0021140.1 Steroid CYP51G1 medium borderline
Slyc10G0023430.1 Steroid CYP51G1 medium borderline
Slyc12G0012840.1 Steroid CYP51G1 medium borderline