PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

1896
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Slyc08G0021100.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc08G0021110.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc08G0021120.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc08G0022110.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc08G0022980.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc08G0025030.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc09G0016590.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc09G0016770.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc10G0003090.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc10G0003120.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc10G0008140.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc10G0017780.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc10G0017790.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc10G0017810.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc10G0017950.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc10G0021260.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc11G0003160.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc11G0012520.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc12G0008870.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc12G0018660.1 Steroid BR6OX2/CYP85A2 low borderline
Slyc00G0006820.1 Steroid CAS medium pass
Slyc01G0026520.1 Steroid CAS medium pass
Slyc01G0029780.1 Steroid CAS medium pass
Slyc01G0029790.1 Steroid CAS medium pass
Slyc01G0029800.1 Steroid CAS medium pass
Slyc01G0029810.1 Steroid CAS medium pass
Slyc01G0033270.1 Steroid CAS medium pass
Slyc01G0033280.1 Steroid CAS low borderline
Slyc01G0037350.1 Steroid CAS medium pass
Slyc01G0037370.1 Steroid CAS medium pass
Slyc01G0037390.1 Steroid CAS medium pass
Slyc01G0037400.1 Steroid CAS medium pass
Slyc01G0037440.1 Steroid CAS medium pass
Slyc01G0037460.1 Steroid CAS medium pass
Slyc01G0037480.1 Steroid CAS medium pass
Slyc02G0019720.1 Steroid CAS medium pass
Slyc02G0019770.1 Steroid CAS low borderline
Slyc03G0001640.1 Steroid CAS low borderline
Slyc03G0002900.1 Steroid CAS low borderline
Slyc03G0025710.1 Steroid CAS medium pass
Slyc04G0013270.1 Steroid CAS medium pass
Slyc04G0014320.1 Steroid CAS low borderline
Slyc04G0016900.1 Steroid CAS medium pass
Slyc04G0017810.1 Steroid CAS medium pass
Slyc04G0017820.1 Steroid CAS medium pass
Slyc04G0017840.1 Steroid CAS medium pass
Slyc05G0017950.1 Steroid CAS medium pass
Slyc06G0012750.1 Steroid CAS low borderline
Slyc06G0028930.1 Steroid CAS medium pass
Slyc07G0011970.1 Steroid CAS medium pass