PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

1896
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Slyc07G0021180.1 Alkaloid 7DLH medium borderline
Slyc07G0021190.1 Alkaloid 7DLH medium borderline
Slyc08G0022980.1 Alkaloid 7DLH medium borderline
Slyc08G0025030.1 Alkaloid 7DLH low borderline
Slyc10G0003120.1 Alkaloid 7DLH medium borderline
Slyc10G0020530.1 Alkaloid 7DLH medium borderline
Slyc10G0022580.1 Alkaloid 7DLH medium borderline
Slyc12G0015140.1 Alkaloid 7DLH low borderline
Slyc03G0007650.1 Alkaloid 8HGO medium borderline
Slyc03G0009600.1 Alkaloid 8HGO low borderline
Slyc03G0009640.1 Alkaloid 8HGO low borderline
Slyc03G0009650.1 Alkaloid 8HGO low borderline
Slyc04G0017510.1 Alkaloid 8HGO medium borderline
Slyc04G0020530.1 Alkaloid 8HGO medium borderline
Slyc04G0020540.1 Alkaloid 8HGO medium borderline
Slyc04G0027560.1 Alkaloid 8HGO medium borderline
Slyc04G0027570.1 Alkaloid 8HGO medium borderline
Slyc05G0012940.1 Alkaloid 8HGO low borderline
Slyc05G0012950.1 Alkaloid 8HGO medium pass
Slyc05G0025080.1 Alkaloid 8HGO low borderline
Slyc05G0025240.1 Alkaloid 8HGO low borderline
Slyc06G0012480.1 Alkaloid 8HGO medium borderline
Slyc06G0021500.1 Alkaloid 8HGO medium borderline
Slyc07G0007210.1 Alkaloid 8HGO medium pass
Slyc07G0021600.1 Alkaloid 8HGO low borderline
Slyc07G0021620.1 Alkaloid 8HGO low borderline
Slyc07G0021630.1 Alkaloid 8HGO low borderline
Slyc07G0021640.1 Alkaloid 8HGO low borderline
Slyc08G0025160.1 Alkaloid 8HGO medium borderline
Slyc09G0009300.1 Alkaloid 8HGO low borderline
Slyc09G0009330.1 Alkaloid 8HGO medium pass
Slyc09G0014730.1 Alkaloid 8HGO medium borderline
Slyc11G0022320.1 Alkaloid 8HGO medium borderline
Slyc12G0020890.1 Alkaloid 8HGO medium borderline
Slyc01G0042320.1 Alkaloid ADC medium pass
Slyc10G0014360.1 Alkaloid ADC medium pass
Slyc02G0003340.1 Alkaloid BBE medium borderline
Slyc02G0003350.1 Alkaloid BBE medium borderline
Slyc02G0013140.1 Alkaloid BBE medium borderline
Slyc02G0013590.1 Alkaloid BBE medium borderline
Slyc02G0013600.1 Alkaloid BBE medium borderline
Slyc02G0013620.1 Alkaloid BBE medium borderline
Slyc02G0013640.1 Alkaloid BBE medium borderline
Slyc02G0013650.1 Alkaloid BBE medium borderline
Slyc02G0013670.1 Alkaloid BBE medium borderline
Slyc02G0013680.1 Alkaloid BBE medium borderline
Slyc02G0013690.1 Alkaloid BBE medium borderline
Slyc02G0019330.1 Alkaloid BBE medium borderline
Slyc02G0019340.1 Alkaloid BBE medium borderline
Slyc02G0019350.1 Alkaloid BBE medium borderline