PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

1896
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
Reset
Gene Pathway Family Confidence Status
Slyc02G0019360.1 Alkaloid BBE medium borderline
Slyc02G0019370.1 Alkaloid BBE medium borderline
Slyc02G0019520.1 Alkaloid BBE low borderline
Slyc02G0021140.1 Alkaloid BBE medium borderline
Slyc03G0001790.1 Alkaloid BBE medium borderline
Slyc04G0025680.1 Alkaloid BBE medium borderline
Slyc06G0016030.1 Alkaloid BBE medium borderline
Slyc06G0016040.1 Alkaloid BBE medium borderline
Slyc08G0014790.1 Alkaloid BBE low borderline
Slyc09G0017210.1 Alkaloid BBE medium borderline
Slyc10G0014380.1 Alkaloid BBE medium borderline
Slyc10G0014390.1 Alkaloid BBE medium borderline
Slyc10G0014400.1 Alkaloid BBE medium borderline
Slyc10G0014410.1 Alkaloid BBE medium borderline
Slyc10G0014420.1 Alkaloid BBE medium borderline
Slyc10G0014430.1 Alkaloid BBE medium borderline
Slyc10G0014440.1 Alkaloid BBE medium borderline
Slyc10G0014450.1 Alkaloid BBE medium borderline
Slyc10G0014460.1 Alkaloid BBE medium borderline
Slyc10G0014470.1 Alkaloid BBE medium borderline
Slyc11G0013460.1 Alkaloid BBE low borderline
Slyc00G0000170.1 Alkaloid CNMT low borderline
Slyc01G0041100.1 Alkaloid CNMT low borderline
Slyc02G0014680.1 Alkaloid CNMT low borderline
Slyc02G0024880.1 Alkaloid CNMT low borderline
Slyc02G0032090.1 Alkaloid CNMT low borderline
Slyc03G0013290.1 Alkaloid CNMT low borderline
Slyc03G0029780.1 Alkaloid CNMT low borderline
Slyc07G0019450.1 Alkaloid CNMT low borderline
Slyc08G0010960.1 Alkaloid CNMT medium borderline
Slyc09G0022290.1 Alkaloid CNMT medium pass
Slyc11G0001180.1 Alkaloid CNMT low borderline
Slyc12G0022990.1 Alkaloid CNMT low borderline
Slyc01G0001730.1 Alkaloid CODM/T6ODM medium borderline
Slyc01G0001760.1 Alkaloid CODM/T6ODM medium borderline
Slyc01G0013570.1 Alkaloid CODM/T6ODM medium borderline
Slyc01G0023740.1 Alkaloid CODM/T6ODM medium borderline
Slyc01G0023770.1 Alkaloid CODM/T6ODM medium borderline
Slyc01G0040650.1 Alkaloid CODM/T6ODM medium borderline
Slyc01G0040670.1 Alkaloid CODM/T6ODM medium borderline
Slyc02G0006330.1 Alkaloid CODM/T6ODM medium borderline
Slyc02G0007470.1 Alkaloid CODM/T6ODM medium borderline
Slyc02G0007500.1 Alkaloid CODM/T6ODM medium borderline
Slyc02G0007510.1 Alkaloid CODM/T6ODM medium borderline
Slyc02G0014900.1 Alkaloid CODM/T6ODM medium borderline
Slyc02G0014930.1 Alkaloid CODM/T6ODM medium borderline
Slyc02G0014940.1 Alkaloid CODM/T6ODM medium borderline
Slyc02G0014950.1 Alkaloid CODM/T6ODM medium borderline
Slyc02G0014960.1 Alkaloid CODM/T6ODM medium borderline
Slyc02G0014980.1 Alkaloid CODM/T6ODM medium borderline