PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

2234
Candidate Protein Records
1896
Pathway-Level Records
4749
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Slyc10G0009890.1 Flavonoid F3H low borderline
Slyc10G0009910.1 Flavonoid F3H low borderline
Slyc10G0017190.1 Flavonoid F3H medium borderline
Slyc10G0017370.1 Flavonoid F3H medium borderline
Slyc10G0017380.1 Flavonoid F3H low borderline
Slyc10G0024070.1 Flavonoid F3H medium borderline
Slyc10G0025760.1 Flavonoid F3H medium borderline
Slyc11G0003080.1 Flavonoid F3H low borderline
Slyc11G0003090.1 Flavonoid F3H medium borderline
Slyc11G0004550.1 Flavonoid F3H medium borderline
Slyc11G0004560.1 Flavonoid F3H medium borderline
Slyc11G0006730.1 Flavonoid F3H low borderline
Slyc11G0007470.1 Flavonoid F3H medium borderline
Slyc11G0007750.1 Flavonoid F3H medium borderline
Slyc11G0013310.1 Flavonoid F3H medium borderline
Slyc11G0013880.1 Flavonoid F3H medium borderline
Slyc11G0013890.1 Flavonoid F3H medium borderline
Slyc11G0023180.1 Flavonoid F3H medium borderline
Slyc11G0023190.1 Flavonoid F3H medium borderline
Slyc11G0023200.1 Flavonoid F3H medium pass
Slyc11G0023210.1 Flavonoid F3H medium borderline
Slyc11G0023280.1 Flavonoid F3H medium pass
Slyc11G0023390.1 Flavonoid F3H medium borderline
Slyc12G0001000.1 Flavonoid F3H medium borderline
Slyc12G0001420.1 Flavonoid F3H medium borderline
Slyc12G0005970.1 Flavonoid F3H medium borderline
Slyc12G0010370.1 Flavonoid F3H low borderline
Slyc12G0024660.1 Flavonoid F3H low borderline
Slyc03G0027690.1 Flavonoid FLS medium borderline
Slyc06G0026620.1 Flavonoid FLS medium borderline
Slyc00G0004180.1 Flavonoid FNS medium borderline
Slyc01G0002920.1 Flavonoid FNS medium borderline
Slyc02G0009960.1 Flavonoid FNS medium borderline
Slyc02G0029900.1 Flavonoid FNS medium borderline
Slyc03G0008870.1 Flavonoid FNS medium borderline
Slyc03G0023120.1 Flavonoid FNS medium borderline
Slyc04G0005310.1 Flavonoid FNS low borderline
Slyc04G0009950.1 Flavonoid FNS low borderline
Slyc04G0012460.1 Flavonoid FNS medium borderline
Slyc04G0013860.1 Flavonoid FNS medium borderline
Slyc04G0016470.1 Flavonoid FNS medium pass
Slyc04G0016490.1 Flavonoid FNS medium borderline
Slyc05G0010910.1 Flavonoid FNS medium borderline
Slyc06G0012740.1 Flavonoid FNS medium borderline
Slyc06G0012770.1 Flavonoid FNS medium borderline
Slyc06G0014560.1 Flavonoid FNS low borderline
Slyc06G0023710.1 Flavonoid FNS medium borderline
Slyc06G0025770.1 Flavonoid FNS medium borderline
Slyc06G0027430.1 Flavonoid FNS low borderline
Slyc07G0019100.1 Flavonoid FNS medium borderline