Solanum tuberosum (solanum_tuberosum)
Imported from atlas release summary for Solanum tuberosum.
1842
Candidate Protein Records
1621
Pathway-Level Records
4270
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4270
Family-Level Calls
C4H
7.45%
C3'H/CYP98A
6.6%
BAHD
4.78%
UGT
4.4%
T3O
4.24%
7DLGT
4.12%
UFGT
4.05%
CYP76
4.03%
Other Families
60.33%
More Families (93)
IFS
171
4.0%
4CL
135
3.16%
F3H
132
3.09%
BR6OX2/CYP85A2
119
2.79%
F3'H/CYP75B
118
2.76%
POD
106
2.48%
H6H
94
2.2%
CYP71
92
2.15%
DWF4/CYP90B1
87
2.04%
CODM/T6ODM
76
1.78%
TPS
71
1.66%
NMT
69
1.62%
GES
59
1.38%
TAT
52
1.22%
STR
45
1.05%
TRI/TRII
45
1.05%
SMT1/SMT2/SMT3
43
1.01%
CAS
40
0.94%
T16H
39
0.91%
IFR
38
0.89%
CYP90D1
37
0.87%
ANS/LDOX
36
0.84%
CAD
36
0.84%
F5H/CYP84A
35
0.82%
LAC
34
0.8%
COMT
33
0.77%
SLS
32
0.75%
G8O/G8H
30
0.7%
CSE
30
0.7%
FNS
29
0.68%
16OMT
28
0.66%
PYKS
27
0.63%
F3'5'H/CYP75A
27
0.63%
CYP51G1
27
0.63%
7DLH
26
0.61%
IO
24
0.56%
GS
22
0.52%
NCS
21
0.49%
BBE
18
0.42%
PAL
18
0.42%
CCR
18
0.42%
CPD/CYP90A1
18
0.42%
FPPS
18
0.42%
HCT
17
0.4%
BR6OX1/CYP85A1
17
0.4%
8HGO
14
0.33%
COR
14
0.33%
LAMT
14
0.33%
TYDC_DDC
14
0.33%
SGD
13
0.3%
ANR
13
0.3%
CHS
13
0.3%
SQS/FDFT1
13
0.3%
TDC
11
0.26%
DFR
11
0.26%
HMGR
11
0.26%
CYP80B1
10
0.23%
RAS
10
0.23%
AACT
9
0.21%
PMT
8
0.19%
MPO
8
0.19%
ROT3/CYP90C1
8
0.19%
SMO1/SMO2
7
0.16%
GGPPS
7
0.16%
CYP719
6
0.14%
CCoAOMT
6
0.14%
SQE
6
0.14%
FLS
5
0.12%
CPR
5
0.12%
DET2
5
0.12%
ODC
4
0.09%
DXS
4
0.09%
MCT/IspD
4
0.09%
ADC
3
0.07%
CNMT
3
0.07%
MVD
3
0.07%
XMT_MXMT_DXMT
2
0.05%
ISY
2
0.05%
CHI
2
0.05%
FK
2
0.05%
HDS/IspG
2
0.05%
IDI
2
0.05%
MVK
2
0.05%
HMGS
2
0.05%
6OMT_4OMT_SOMT
1
0.02%
CYP80F1
1
0.02%
DWF7
1
0.02%
CPI1
1
0.02%
DWF1
1
0.02%
HYD1
1
0.02%
GPPS
1
0.02%
CMK/IspE
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 520 | 15 | UGT (179) | View species results |
| Alkaloid pathway | 365 | 24 | 7DLGT (90) | View species results |
| Phenylpropanoid pathway | 263 | 11 | POD (104) | View species results |
| Flavonoid pathway | 225 | 13 | UFGT (150) | View species results |
| Rosmarinic acid pathway | 167 | 6 | C4H (101) | View species results |
| Steroid pathway | 81 | 11 | CAS (30) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1877 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 231 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Stub08G0024860.2 | Alkaloid | 7DLGT | medium | pass |
| Stub08G0024860.3 | Alkaloid | 7DLGT | medium | pass |
| Stub08G0025400.1 | Alkaloid | 7DLGT | medium | pass |
| Stub08G0025410.2 | Alkaloid | 7DLGT | medium | pass |
| Stub09G0003540.1 | Alkaloid | 7DLGT | medium | pass |
| Stub09G0003960.1 | Alkaloid | 7DLGT | low | borderline |
| Stub09G0003980.1 | Alkaloid | 7DLGT | low | borderline |
| Stub09G0008930.2 | Alkaloid | 7DLGT | low | borderline |
| Stub09G0013940.1 | Alkaloid | 7DLGT | low | borderline |
| Stub09G0013940.2 | Alkaloid | 7DLGT | low | borderline |
| Stub09G0016470.1 | Alkaloid | 7DLGT | low | borderline |
| Stub09G0020160.1 | Alkaloid | 7DLGT | high | pass |
| Stub09G0020170.1 | Alkaloid | 7DLGT | high | pass |
| Stub09G0027970.3 | Alkaloid | 7DLGT | low | borderline |
| Stub10G0000210.2 | Alkaloid | 7DLGT | medium | pass |
| Stub10G0000850.1 | Alkaloid | 7DLGT | medium | pass |
| Stub10G0001390.2 | Alkaloid | 7DLGT | low | borderline |
| Stub10G0001460.1 | Alkaloid | 7DLGT | medium | pass |
| Stub10G0001460.2 | Alkaloid | 7DLGT | medium | pass |
| Stub10G0002090.1 | Alkaloid | 7DLGT | low | borderline |
| Stub10G0002560.1 | Alkaloid | 7DLGT | low | borderline |
| Stub10G0003240.1 | Alkaloid | 7DLGT | medium | pass |
| Stub10G0004490.2 | Alkaloid | 7DLGT | low | borderline |
| Stub10G0004490.3 | Alkaloid | 7DLGT | low | borderline |
| Stub10G0005960.1 | Alkaloid | 7DLGT | low | borderline |
| Stub10G0009100.1 | Alkaloid | 7DLGT | low | borderline |
| Stub10G0009140.1 | Alkaloid | 7DLGT | low | borderline |
| Stub10G0015990.1 | Alkaloid | 7DLGT | low | borderline |
| Stub10G0016140.1 | Alkaloid | 7DLGT | low | borderline |
| Stub10G0017910.1 | Alkaloid | 7DLGT | low | borderline |
| Stub10G0018900.1 | Alkaloid | 7DLGT | medium | pass |
| Stub11G0000770.1 | Alkaloid | 7DLGT | medium | pass |
| Stub11G0006200.1 | Alkaloid | 7DLGT | low | borderline |
| Stub11G0010110.1 | Alkaloid | 7DLGT | medium | pass |
| Stub11G0010150.2 | Alkaloid | 7DLGT | low | borderline |
| Stub11G0012350.1 | Alkaloid | 7DLGT | low | borderline |
| Stub11G0020250.1 | Alkaloid | 7DLGT | low | borderline |
| Stub11G0020450.2 | Alkaloid | 7DLGT | low | borderline |
| Stub11G0021190.3 | Alkaloid | 7DLGT | high | pass |
| Stub11G0021660.1 | Alkaloid | 7DLGT | low | borderline |
| Stub11G0024000.1 | Alkaloid | 7DLGT | medium | pass |
| Stub11G0024010.1 | Alkaloid | 7DLGT | medium | pass |
| Stub12G0001700.3 | Alkaloid | 7DLGT | low | borderline |
| Stub12G0001730.1 | Alkaloid | 7DLGT | low | borderline |
| Stub12G0005000.2 | Alkaloid | 7DLGT | high | pass |
| Stub12G0005010.3 | Alkaloid | 7DLGT | high | pass |
| Stub12G0005010.4 | Alkaloid | 7DLGT | high | pass |
| Stub12G0005010.5 | Alkaloid | 7DLGT | high | pass |
| Stub12G0018410.1 | Alkaloid | 7DLGT | high | pass |
| Stub12G0018420.1 | Alkaloid | 7DLGT | low | borderline |