PlantSME Plant secondary metabolism enzyme database

Sonneratia caseolaris (sonneratia_caseolaris)

Imported from atlas release summary for Sonneratia caseolaris.

1254
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.35% Phenylpropanoid pathway 21.77% Alkaloid pathway 21.61% Flavonoid pathway 12.36% Rosmarinic acid pathway 7.97% Steroid pathway 6.94%
Family Distribution
BAHD 6.59% C4H 5.85% POD 4.64% C3'H/CYP98A 4.64% 4CL 4.03% UGT 3.58% CYP76 3.52% IFS 3.39%
Other Families 63.78%
More Families (96)
7DLGT 103 3.29% UFGT 94 3.01% NMT 84 2.69% T3O 78 2.49% F3H 78 2.49% CAD 67 2.14% DWF4/CYP90B1 63 2.01% CODM/T6ODM 59 1.89% STR 53 1.69% F3'H/CYP75B 52 1.66% SMT1/SMT2/SMT3 47 1.5% IFR 46 1.47% TRI/TRII 45 1.44% BR6OX2/CYP85A2 41 1.31% TPS 41 1.31% H6H 40 1.28% LAC 39 1.25% CAS 38 1.21% CSE 37 1.18% GES 36 1.15% PYKS 36 1.15% HCT 36 1.15% TAT 35 1.12% G8O/G8H 34 1.09% GS 34 1.09% CYP71 29 0.93% SGD 27 0.86% T16H 27 0.86% ANR 26 0.83% CCR 25 0.8% RAS 25 0.8% FNS 23 0.74% IO 22 0.7% COMT 22 0.7% SLS 20 0.64% PAL 18 0.58% ANS/LDOX 18 0.58% F5H/CYP84A 18 0.58% BBE 17 0.54% PMT 16 0.51% 8HGO 16 0.51% CYP90D1 16 0.51% DFR 15 0.48% F3'5'H/CYP75A 15 0.48% LAMT 14 0.45% 7DLH 13 0.42% CHS 13 0.42% BR6OX1/CYP85A1 13 0.42% COR 12 0.38% ROT3/CYP90C1 12 0.38% FPPS 11 0.35% CPR 10 0.32% SQS/FDFT1 10 0.32% CNMT 9 0.29% NCS 9 0.29% MPO 9 0.29% SMO1/SMO2 9 0.29% CPD/CYP90A1 8 0.26% SQE 7 0.22% GGPPS 7 0.22% AACT 7 0.22% HMGR 7 0.22% 16OMT 6 0.19% ADC 6 0.19% CCoAOMT 6 0.19% MVK 6 0.19% CHI 5 0.16% HPPR 5 0.16% CYP51G1 5 0.16% MVD 5 0.16% TYDC_DDC 4 0.13% CYP80B1 4 0.13% CYP719 4 0.13% ISY 4 0.13% DET2 4 0.13% IDI 4 0.13% TDC 3 0.1% DWF7 3 0.1% DXS 3 0.1% HMGS 3 0.1% CYP80F1 2 0.06% FK 2 0.06% CMK/IspE 2 0.06% HDS/IspG 2 0.06% PMK 2 0.06% MCT/IspD 2 0.06% DXR 2 0.06% MDS/IspF 2 0.06% 6OMT_4OMT_SOMT 1 0.03% ODC 1 0.03% DWF1 1 0.03% HYD1 1 0.03% CPI1 1 0.03% DWF5 1 0.03% GPPS 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 368 20 BAHD (145) View species results
Phenylpropanoid pathway 273 11 POD (129) View species results
Alkaloid pathway 271 21 NMT (38) View species results
Flavonoid pathway 155 10 UFGT (86) View species results
Rosmarinic acid pathway 100 7 C4H (29) View species results
Steroid pathway 87 11 SMT1/SMT2/SMT3 (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1020 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 267 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
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Gene Pathway Family Confidence Status Best Target
sonneratia_caseolaris_Sc2_00766 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
sonneratia_caseolaris_Sc2_02395 Terpenoid FPPS low borderline FPPS__00005__sp_P34802_GGPP1_ARATH
sonneratia_caseolaris_Sc2_08133 Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC
sonneratia_caseolaris_Sc2_10569 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
sonneratia_caseolaris_Sc2_15539 Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC
sonneratia_caseolaris_Sc2_16459 Terpenoid FPPS low borderline FPPS__00001__sp_B8XA40_ZFPS_SOLHA
sonneratia_caseolaris_Sc2_19961 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
sonneratia_caseolaris_Sc2_22828 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
sonneratia_caseolaris_Sc2_23807 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
sonneratia_caseolaris_Sc2_27125 Terpenoid FPPS medium borderline FPPS__00005__sp_P34802_GGPP1_ARATH
sonneratia_caseolaris_Sc2_27928 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI