Sonneratia caseolaris (sonneratia_caseolaris)
Imported from atlas release summary for Sonneratia caseolaris.
1254
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1254
Candidate Genes
BAHD
6.59%
C4H
5.85%
POD
4.64%
C3'H/CYP98A
4.64%
4CL
4.03%
UGT
3.58%
CYP76
3.52%
IFS
3.39%
Other Families
63.78%
More Families (96)
7DLGT
103
3.29%
UFGT
94
3.01%
NMT
84
2.69%
T3O
78
2.49%
F3H
78
2.49%
CAD
67
2.14%
DWF4/CYP90B1
63
2.01%
CODM/T6ODM
59
1.89%
STR
53
1.69%
F3'H/CYP75B
52
1.66%
SMT1/SMT2/SMT3
47
1.5%
IFR
46
1.47%
TRI/TRII
45
1.44%
BR6OX2/CYP85A2
41
1.31%
TPS
41
1.31%
H6H
40
1.28%
LAC
39
1.25%
CAS
38
1.21%
CSE
37
1.18%
GES
36
1.15%
PYKS
36
1.15%
HCT
36
1.15%
TAT
35
1.12%
G8O/G8H
34
1.09%
GS
34
1.09%
CYP71
29
0.93%
SGD
27
0.86%
T16H
27
0.86%
ANR
26
0.83%
CCR
25
0.8%
RAS
25
0.8%
FNS
23
0.74%
IO
22
0.7%
COMT
22
0.7%
SLS
20
0.64%
PAL
18
0.58%
ANS/LDOX
18
0.58%
F5H/CYP84A
18
0.58%
BBE
17
0.54%
PMT
16
0.51%
8HGO
16
0.51%
CYP90D1
16
0.51%
DFR
15
0.48%
F3'5'H/CYP75A
15
0.48%
LAMT
14
0.45%
7DLH
13
0.42%
CHS
13
0.42%
BR6OX1/CYP85A1
13
0.42%
COR
12
0.38%
ROT3/CYP90C1
12
0.38%
FPPS
11
0.35%
CPR
10
0.32%
SQS/FDFT1
10
0.32%
CNMT
9
0.29%
NCS
9
0.29%
MPO
9
0.29%
SMO1/SMO2
9
0.29%
CPD/CYP90A1
8
0.26%
SQE
7
0.22%
GGPPS
7
0.22%
AACT
7
0.22%
HMGR
7
0.22%
16OMT
6
0.19%
ADC
6
0.19%
CCoAOMT
6
0.19%
MVK
6
0.19%
CHI
5
0.16%
HPPR
5
0.16%
CYP51G1
5
0.16%
MVD
5
0.16%
TYDC_DDC
4
0.13%
CYP80B1
4
0.13%
CYP719
4
0.13%
ISY
4
0.13%
DET2
4
0.13%
IDI
4
0.13%
TDC
3
0.1%
DWF7
3
0.1%
DXS
3
0.1%
HMGS
3
0.1%
CYP80F1
2
0.06%
FK
2
0.06%
CMK/IspE
2
0.06%
HDS/IspG
2
0.06%
PMK
2
0.06%
MCT/IspD
2
0.06%
DXR
2
0.06%
MDS/IspF
2
0.06%
6OMT_4OMT_SOMT
1
0.03%
ODC
1
0.03%
DWF1
1
0.03%
HYD1
1
0.03%
CPI1
1
0.03%
DWF5
1
0.03%
GPPS
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 368 | 20 | BAHD (145) | View species results |
| Phenylpropanoid pathway | 273 | 11 | POD (129) | View species results |
| Alkaloid pathway | 271 | 21 | NMT (38) | View species results |
| Flavonoid pathway | 155 | 10 | UFGT (86) | View species results |
| Rosmarinic acid pathway | 100 | 7 | C4H (29) | View species results |
| Steroid pathway | 87 | 11 | SMT1/SMT2/SMT3 (30) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1020 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 267 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: RAS
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| sonneratia_caseolaris_Sc2_00468 | Rosmarinic Acid | RAS | low | borderline |
| sonneratia_caseolaris_Sc2_03054 | Rosmarinic Acid | RAS | medium | pass |
| sonneratia_caseolaris_Sc2_04887 | Rosmarinic Acid | RAS | low | borderline |
| sonneratia_caseolaris_Sc2_06102 | Rosmarinic Acid | RAS | low | borderline |
| sonneratia_caseolaris_Sc2_06607 | Rosmarinic Acid | RAS | low | borderline |
| sonneratia_caseolaris_Sc2_07264 | Rosmarinic Acid | RAS | low | borderline |
| sonneratia_caseolaris_Sc2_08055 | Rosmarinic Acid | RAS | low | borderline |
| sonneratia_caseolaris_Sc2_08148 | Rosmarinic Acid | RAS | low | borderline |
| sonneratia_caseolaris_Sc2_09697 | Rosmarinic Acid | RAS | low | borderline |
| sonneratia_caseolaris_Sc2_10078 | Rosmarinic Acid | RAS | low | borderline |
| sonneratia_caseolaris_Sc2_12482 | Rosmarinic Acid | RAS | low | borderline |
| sonneratia_caseolaris_Sc2_12982 | Rosmarinic Acid | RAS | medium | pass |
| sonneratia_caseolaris_Sc2_13452 | Rosmarinic Acid | RAS | medium | pass |
| sonneratia_caseolaris_Sc2_16487 | Rosmarinic Acid | RAS | low | borderline |
| sonneratia_caseolaris_Sc2_17293 | Rosmarinic Acid | RAS | low | borderline |
| sonneratia_caseolaris_Sc2_18456 | Rosmarinic Acid | RAS | medium | pass |
| sonneratia_caseolaris_Sc2_19195 | Rosmarinic Acid | RAS | low | borderline |
| sonneratia_caseolaris_Sc2_19977 | Rosmarinic Acid | RAS | low | borderline |
| sonneratia_caseolaris_Sc2_20385 | Rosmarinic Acid | RAS | low | borderline |
| sonneratia_caseolaris_Sc2_21313 | Rosmarinic Acid | RAS | low | borderline |
| sonneratia_caseolaris_Sc2_22345 | Rosmarinic Acid | RAS | low | borderline |
| sonneratia_caseolaris_Sc2_22751 | Rosmarinic Acid | RAS | low | borderline |
| sonneratia_caseolaris_Sc2_23398 | Rosmarinic Acid | RAS | medium | pass |
| sonneratia_caseolaris_Sc2_23742 | Rosmarinic Acid | RAS | medium | pass |
| sonneratia_caseolaris_Sc2_24055 | Rosmarinic Acid | RAS | medium | pass |