Sonneratia caseolaris (sonneratia_caseolaris)
Imported from atlas release summary for Sonneratia caseolaris.
1648
Candidate Protein Records
1254
Pathway-Level Records
3128
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3128
Family-Level Calls
BAHD
6.59%
C4H
5.85%
POD
4.64%
C3'H/CYP98A
4.64%
4CL
4.03%
UGT
3.58%
CYP76
3.52%
IFS
3.39%
Other Families
63.78%
More Families (96)
7DLGT
103
3.29%
UFGT
94
3.01%
NMT
84
2.69%
T3O
78
2.49%
F3H
78
2.49%
CAD
67
2.14%
DWF4/CYP90B1
63
2.01%
CODM/T6ODM
59
1.89%
STR
53
1.69%
F3'H/CYP75B
52
1.66%
SMT1/SMT2/SMT3
47
1.5%
IFR
46
1.47%
TRI/TRII
45
1.44%
BR6OX2/CYP85A2
41
1.31%
TPS
41
1.31%
H6H
40
1.28%
LAC
39
1.25%
CAS
38
1.21%
CSE
37
1.18%
GES
36
1.15%
PYKS
36
1.15%
HCT
36
1.15%
TAT
35
1.12%
G8O/G8H
34
1.09%
GS
34
1.09%
CYP71
29
0.93%
SGD
27
0.86%
T16H
27
0.86%
ANR
26
0.83%
CCR
25
0.8%
RAS
25
0.8%
FNS
23
0.74%
IO
22
0.7%
COMT
22
0.7%
SLS
20
0.64%
PAL
18
0.58%
ANS/LDOX
18
0.58%
F5H/CYP84A
18
0.58%
BBE
17
0.54%
PMT
16
0.51%
8HGO
16
0.51%
CYP90D1
16
0.51%
DFR
15
0.48%
F3'5'H/CYP75A
15
0.48%
LAMT
14
0.45%
7DLH
13
0.42%
CHS
13
0.42%
BR6OX1/CYP85A1
13
0.42%
COR
12
0.38%
ROT3/CYP90C1
12
0.38%
FPPS
11
0.35%
CPR
10
0.32%
SQS/FDFT1
10
0.32%
CNMT
9
0.29%
NCS
9
0.29%
MPO
9
0.29%
SMO1/SMO2
9
0.29%
CPD/CYP90A1
8
0.26%
SQE
7
0.22%
GGPPS
7
0.22%
AACT
7
0.22%
HMGR
7
0.22%
16OMT
6
0.19%
ADC
6
0.19%
CCoAOMT
6
0.19%
MVK
6
0.19%
CHI
5
0.16%
HPPR
5
0.16%
CYP51G1
5
0.16%
MVD
5
0.16%
TYDC_DDC
4
0.13%
CYP80B1
4
0.13%
CYP719
4
0.13%
ISY
4
0.13%
DET2
4
0.13%
IDI
4
0.13%
TDC
3
0.1%
DWF7
3
0.1%
DXS
3
0.1%
HMGS
3
0.1%
CYP80F1
2
0.06%
FK
2
0.06%
CMK/IspE
2
0.06%
HDS/IspG
2
0.06%
PMK
2
0.06%
MCT/IspD
2
0.06%
DXR
2
0.06%
MDS/IspF
2
0.06%
6OMT_4OMT_SOMT
1
0.03%
ODC
1
0.03%
DWF1
1
0.03%
HYD1
1
0.03%
CPI1
1
0.03%
DWF5
1
0.03%
GPPS
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 368 | 20 | BAHD (145) | View species results |
| Phenylpropanoid pathway | 273 | 11 | POD (129) | View species results |
| Alkaloid pathway | 271 | 21 | NMT (38) | View species results |
| Flavonoid pathway | 155 | 10 | UFGT (86) | View species results |
| Rosmarinic acid pathway | 100 | 7 | C4H (29) | View species results |
| Steroid pathway | 87 | 11 | SMT1/SMT2/SMT3 (30) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1020 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 267 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| sonneratia_caseolaris_Sc2_18499 | Alkaloid | NCS | medium | borderline |
| sonneratia_caseolaris_Sc2_24289 | Alkaloid | NCS | medium | borderline |
| sonneratia_caseolaris_Sc2_24482 | Alkaloid | NCS | low | borderline |
| sonneratia_caseolaris_Sc2_27280 | Alkaloid | NCS | low | borderline |
| sonneratia_caseolaris_Sc2_00499 | Alkaloid | NMT | medium | pass |
| sonneratia_caseolaris_Sc2_00525 | Alkaloid | NMT | low | borderline |
| sonneratia_caseolaris_Sc2_01344 | Alkaloid | NMT | medium | pass |
| sonneratia_caseolaris_Sc2_01362 | Alkaloid | NMT | medium | borderline |
| sonneratia_caseolaris_Sc2_01586 | Alkaloid | NMT | medium | pass |
| sonneratia_caseolaris_Sc2_01722 | Alkaloid | NMT | medium | borderline |
| sonneratia_caseolaris_Sc2_01986 | Alkaloid | NMT | low | borderline |
| sonneratia_caseolaris_Sc2_02761 | Alkaloid | NMT | medium | borderline |
| sonneratia_caseolaris_Sc2_02897 | Alkaloid | NMT | medium | pass |
| sonneratia_caseolaris_Sc2_02980 | Alkaloid | NMT | medium | borderline |
| sonneratia_caseolaris_Sc2_03753 | Alkaloid | NMT | medium | pass |
| sonneratia_caseolaris_Sc2_03813 | Alkaloid | NMT | low | borderline |
| sonneratia_caseolaris_Sc2_04403 | Alkaloid | NMT | medium | borderline |
| sonneratia_caseolaris_Sc2_04467 | Alkaloid | NMT | medium | pass |
| sonneratia_caseolaris_Sc2_05230 | Alkaloid | NMT | medium | pass |
| sonneratia_caseolaris_Sc2_05231 | Alkaloid | NMT | medium | pass |
| sonneratia_caseolaris_Sc2_05232 | Alkaloid | NMT | low | borderline |
| sonneratia_caseolaris_Sc2_05233 | Alkaloid | NMT | medium | pass |
| sonneratia_caseolaris_Sc2_06056 | Alkaloid | NMT | low | borderline |
| sonneratia_caseolaris_Sc2_07306 | Alkaloid | NMT | medium | borderline |
| sonneratia_caseolaris_Sc2_07462 | Alkaloid | NMT | medium | borderline |
| sonneratia_caseolaris_Sc2_07514 | Alkaloid | NMT | medium | pass |
| sonneratia_caseolaris_Sc2_08150 | Alkaloid | NMT | medium | borderline |
| sonneratia_caseolaris_Sc2_08202 | Alkaloid | NMT | medium | pass |
| sonneratia_caseolaris_Sc2_08213 | Alkaloid | NMT | medium | pass |
| sonneratia_caseolaris_Sc2_08312 | Alkaloid | NMT | medium | borderline |
| sonneratia_caseolaris_Sc2_08640 | Alkaloid | NMT | medium | borderline |
| sonneratia_caseolaris_Sc2_08845 | Alkaloid | NMT | medium | borderline |
| sonneratia_caseolaris_Sc2_08881 | Alkaloid | NMT | medium | pass |
| sonneratia_caseolaris_Sc2_09081 | Alkaloid | NMT | medium | pass |
| sonneratia_caseolaris_Sc2_09779 | Alkaloid | NMT | medium | pass |
| sonneratia_caseolaris_Sc2_10249 | Alkaloid | NMT | medium | borderline |
| sonneratia_caseolaris_Sc2_12320 | Alkaloid | NMT | low | borderline |
| sonneratia_caseolaris_Sc2_12543 | Alkaloid | NMT | low | borderline |
| sonneratia_caseolaris_Sc2_12592 | Alkaloid | NMT | medium | pass |
| sonneratia_caseolaris_Sc2_12648 | Alkaloid | NMT | low | borderline |
| sonneratia_caseolaris_Sc2_13955 | Alkaloid | NMT | low | borderline |
| sonneratia_caseolaris_Sc2_13965 | Alkaloid | NMT | low | borderline |
| sonneratia_caseolaris_Sc2_14315 | Alkaloid | NMT | medium | borderline |
| sonneratia_caseolaris_Sc2_16288 | Alkaloid | NMT | medium | pass |
| sonneratia_caseolaris_Sc2_16847 | Alkaloid | NMT | low | borderline |
| sonneratia_caseolaris_Sc2_17241 | Alkaloid | NMT | low | borderline |
| sonneratia_caseolaris_Sc2_17252 | Alkaloid | NMT | medium | pass |
| sonneratia_caseolaris_Sc2_17272 | Alkaloid | NMT | medium | borderline |
| sonneratia_caseolaris_Sc2_17347 | Alkaloid | NMT | medium | pass |
| sonneratia_caseolaris_Sc2_17591 | Alkaloid | NMT | medium | pass |