PlantSME Plant secondary metabolism enzyme database

Sphaerocarpos donnellii (sphaerocarpos_donnellii)

Imported from atlas release summary for Sphaerocarpos donnellii.

687
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 33.77% Terpenoid pathway 20.38% Alkaloid pathway 17.32% Flavonoid pathway 11.79% Rosmarinic acid pathway 10.48% Steroid pathway 6.26%
Family Distribution
POD 9.05% C4H 6.82% C3'H/CYP98A 5.9% 4CL 4.47% BAHD 4.47% CYP76 4.3% NMT 3.9% T3O 3.21%
Other Families 57.88%
More Families (95)
IFS 50 2.87% BR6OX2/CYP85A2 40 2.29% STR 39 2.23% 7DLGT 37 2.12% UGT 36 2.06% UFGT 33 1.89% DWF4/CYP90B1 33 1.89% COMT 32 1.83% F3H 27 1.55% IFR 27 1.55% PAL 24 1.38% CSE 24 1.38% F3'H/CYP75B 23 1.32% PYKS 22 1.26% CODM/T6ODM 20 1.15% BBE 20 1.15% GS 19 1.09% FNS 19 1.09% CAS 19 1.09% TPS 19 1.09% CAD 18 1.03% G8O/G8H 17 0.97% H6H 17 0.97% IO 16 0.92% HCT 16 0.92% GGPPS 16 0.92% CHS 15 0.86% RAS 15 0.86% TRI/TRII 14 0.8% SMT1/SMT2/SMT3 14 0.8% CYP71 14 0.8% T16H 13 0.74% F3'5'H/CYP75A 13 0.74% BR6OX1/CYP85A1 12 0.69% CPD/CYP90A1 12 0.69% GES 11 0.63% CNMT 9 0.52% ANR 8 0.46% DWF1 8 0.46% COR 7 0.4% SLS 7 0.4% DFR 7 0.4% CPR 7 0.4% CYP719 6 0.34% 8HGO 6 0.34% F5H/CYP84A 6 0.34% CCR 6 0.34% CYP90D1 6 0.34% AACT 6 0.34% 16OMT 5 0.29% PMT 5 0.29% ANS/LDOX 5 0.29% LAC 5 0.29% CCoAOMT 5 0.29% FPPS 5 0.29% MVD 5 0.29% ISY 4 0.23% SGD 4 0.23% CHI 4 0.23% TAT 4 0.23% ROT3/CYP90C1 4 0.23% SQS/FDFT1 4 0.23% CYP80B1 3 0.17% ODC 3 0.17% 7DLH 3 0.17% LAMT 3 0.17% CYP51G1 3 0.17% SMO1/SMO2 3 0.17% SQE 3 0.17% MVK 3 0.17% HMGR 3 0.17% MCT/IspD 3 0.17% CMK/IspE 3 0.17% MPO 2 0.11% TDC 2 0.11% NCS 2 0.11% HYD1 2 0.11% DET2 2 0.11% CPI1 2 0.11% DWF7 2 0.11% DXR 2 0.11% DXS 2 0.11% HDR/IspH 2 0.11% HMGS 2 0.11% ADC 1 0.06% TYDC_DDC 1 0.06% CYP80F1 1 0.06% 6OMT_4OMT_SOMT 1 0.06% HPPR 1 0.06% FK 1 0.06% DWF5 1 0.06% HDS/IspG 1 0.06% MDS/IspF 1 0.06% IDI 1 0.06% PMK 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 232 12 POD (147) View species results
Terpenoid pathway 140 20 BAHD (50) View species results
Alkaloid pathway 119 18 NMT (25) View species results
Flavonoid pathway 81 10 UFGT (27) View species results
Rosmarinic acid pathway 72 7 C4H (37) View species results
Steroid pathway 43 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 635 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SMT1/SMT2/SMT3
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Gene Pathway Family Confidence Status Best Target
Sdon423440008090 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00006__sp_Q9LM02_SMT1_ARATH
Sdon571910052050 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00006__sp_Q9LM02_SMT1_ARATH
Sdon589160058990 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00002__sp_H2E7T9_SMTL2_BOTBR
Sdon621840071260 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Sdon647060073590 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Sdon688460094750 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Sdon696870098090 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Sdon699160100480 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00004__sp_Q4VNK0_SMTA_BRAOT
Sdon700680103740 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Sdon713640121630 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Sdon727980132710 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00003__sp_H2E7U0_SMTL3_BOTBR
Sdon744600153940 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Sdon755750169500 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Sdon770450202050 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH