PlantSME Plant secondary metabolism enzyme database

Sphaerocarpos donnellii (sphaerocarpos_donnellii)

Imported from atlas release summary for Sphaerocarpos donnellii.

687
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 33.77% Terpenoid pathway 20.38% Alkaloid pathway 17.32% Flavonoid pathway 11.79% Rosmarinic acid pathway 10.48% Steroid pathway 6.26%
Family Distribution
POD 9.05% C4H 6.82% C3'H/CYP98A 5.9% 4CL 4.47% BAHD 4.47% CYP76 4.3% NMT 3.9% T3O 3.21%
Other Families 57.88%
More Families (95)
IFS 50 2.87% BR6OX2/CYP85A2 40 2.29% STR 39 2.23% 7DLGT 37 2.12% UGT 36 2.06% UFGT 33 1.89% DWF4/CYP90B1 33 1.89% COMT 32 1.83% F3H 27 1.55% IFR 27 1.55% PAL 24 1.38% CSE 24 1.38% F3'H/CYP75B 23 1.32% PYKS 22 1.26% CODM/T6ODM 20 1.15% BBE 20 1.15% GS 19 1.09% FNS 19 1.09% CAS 19 1.09% TPS 19 1.09% CAD 18 1.03% G8O/G8H 17 0.97% H6H 17 0.97% IO 16 0.92% HCT 16 0.92% GGPPS 16 0.92% CHS 15 0.86% RAS 15 0.86% TRI/TRII 14 0.8% SMT1/SMT2/SMT3 14 0.8% CYP71 14 0.8% T16H 13 0.74% F3'5'H/CYP75A 13 0.74% BR6OX1/CYP85A1 12 0.69% CPD/CYP90A1 12 0.69% GES 11 0.63% CNMT 9 0.52% ANR 8 0.46% DWF1 8 0.46% COR 7 0.4% SLS 7 0.4% DFR 7 0.4% CPR 7 0.4% CYP719 6 0.34% 8HGO 6 0.34% F5H/CYP84A 6 0.34% CCR 6 0.34% CYP90D1 6 0.34% AACT 6 0.34% 16OMT 5 0.29% PMT 5 0.29% ANS/LDOX 5 0.29% LAC 5 0.29% CCoAOMT 5 0.29% FPPS 5 0.29% MVD 5 0.29% ISY 4 0.23% SGD 4 0.23% CHI 4 0.23% TAT 4 0.23% ROT3/CYP90C1 4 0.23% SQS/FDFT1 4 0.23% CYP80B1 3 0.17% ODC 3 0.17% 7DLH 3 0.17% LAMT 3 0.17% CYP51G1 3 0.17% SMO1/SMO2 3 0.17% SQE 3 0.17% MVK 3 0.17% HMGR 3 0.17% MCT/IspD 3 0.17% CMK/IspE 3 0.17% MPO 2 0.11% TDC 2 0.11% NCS 2 0.11% HYD1 2 0.11% DET2 2 0.11% CPI1 2 0.11% DWF7 2 0.11% DXR 2 0.11% DXS 2 0.11% HDR/IspH 2 0.11% HMGS 2 0.11% ADC 1 0.06% TYDC_DDC 1 0.06% CYP80F1 1 0.06% 6OMT_4OMT_SOMT 1 0.06% HPPR 1 0.06% FK 1 0.06% DWF5 1 0.06% HDS/IspG 1 0.06% MDS/IspF 1 0.06% IDI 1 0.06% PMK 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 232 12 POD (147) View species results
Terpenoid pathway 140 20 BAHD (50) View species results
Alkaloid pathway 119 18 NMT (25) View species results
Flavonoid pathway 81 10 UFGT (27) View species results
Rosmarinic acid pathway 72 7 C4H (37) View species results
Steroid pathway 43 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 635 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
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Gene Pathway Family Confidence Status Best Target
Sdon463110016040 Alkaloid TRI/TRII low borderline TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Sdon463110016060 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Sdon469080018610 Alkaloid TRI/TRII low borderline TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
Sdon540930039740 Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Sdon604200063740 Alkaloid TRI/TRII low borderline TRI_TRII__00005__sp_P50162_TRN1_DATST
Sdon701250104950 Alkaloid TRI/TRII medium pass TRI_TRII__00005__sp_P50162_TRN1_DATST
Sdon706700114550 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Sdon711780116960 Alkaloid TRI/TRII low borderline TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
Sdon718670127570 Alkaloid TRI/TRII low borderline TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Sdon767490194820 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Sdon769550199670 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Sdon769680200340 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Sdon774660214410 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Sdon794320253180 Alkaloid TRI/TRII medium pass TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH