PlantSME Plant secondary metabolism enzyme database

Timmia megapolitana (timmia_megapolitana)

Imported from atlas release summary for Timmia megapolitana.

565
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.37% Terpenoid pathway 25.84% Alkaloid pathway 19.29% Flavonoid pathway 10.97% Rosmarinic acid pathway 10.09% Steroid pathway 7.43%
Family Distribution
BAHD 6.34% POD 5.99% C4H 5.85% 4CL 5.71% C3'H/CYP98A 5.57% NMT 4.09% CYP76 4.02% STR 3.38%
Other Families 59.06%
More Families (94)
F3H 37 2.61% IFS 36 2.54% BR6OX2/CYP85A2 31 2.18% IFR 30 2.11% T3O 28 1.97% PAL 27 1.9% DWF4/CYP90B1 27 1.9% F3'H/CYP75B 26 1.83% GS 25 1.76% CODM/T6ODM 25 1.76% PYKS 23 1.62% IO 22 1.55% CYP71 21 1.48% 7DLGT 20 1.41% UFGT 20 1.41% SMT1/SMT2/SMT3 20 1.41% UGT 20 1.41% CAD 19 1.34% H6H 16 1.13% CSE 15 1.06% CHS 14 0.99% TRI/TRII 13 0.92% F3'5'H/CYP75A 13 0.92% CCR 12 0.85% RAS 12 0.85% SLS 11 0.78% ANR 11 0.78% CAS 11 0.78% SGD 10 0.7% G8O/G8H 10 0.7% NCS 10 0.7% HCT 10 0.7% LAC 9 0.63% DXS 9 0.63% T16H 8 0.56% BBE 8 0.56% CNMT 8 0.56% 8HGO 7 0.49% COR 7 0.49% DFR 7 0.49% SQS/FDFT1 7 0.49% 7DLH 6 0.42% TDC 6 0.42% LAMT 6 0.42% CPR 6 0.42% CYP90D1 6 0.42% DWF5 6 0.42% GGPPS 6 0.42% PMT 5 0.35% FNS 5 0.35% COMT 5 0.35% CPD/CYP90A1 5 0.35% AACT 5 0.35% ANS/LDOX 4 0.28% FPPS 4 0.28% MPO 3 0.21% TYDC_DDC 3 0.21% CHI 3 0.21% TAT 3 0.21% ROT3/CYP90C1 3 0.21% BR6OX1/CYP85A1 3 0.21% CYP51G1 3 0.21% DET2 3 0.21% CMK/IspE 3 0.21% ADC 2 0.14% 6OMT_4OMT_SOMT 2 0.14% CYP80B1 2 0.14% XMT_MXMT_DXMT 2 0.14% F5H/CYP84A 2 0.14% CCoAOMT 2 0.14% SMO1/SMO2 2 0.14% HYD1 2 0.14% MCT/IspD 2 0.14% MVK 2 0.14% MVD 2 0.14% CYP80F1 1 0.07% CYP719 1 0.07% 16OMT 1 0.07% ISY 1 0.07% FLS 1 0.07% HPPR 1 0.07% CPI1 1 0.07% FK 1 0.07% DWF1 1 0.07% SQE 1 0.07% DWF7 1 0.07% HDS/IspG 1 0.07% HMGR 1 0.07% IDI 1 0.07% HMGS 1 0.07% PMK 1 0.07% MDS/IspF 1 0.07% DXR 1 0.07% HDR/IspH 1 0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 149 11 POD (79) View species results
Terpenoid pathway 146 18 BAHD (64) View species results
Alkaloid pathway 109 16 NMT (22) View species results
Flavonoid pathway 62 10 UFGT (17) View species results
Rosmarinic acid pathway 57 7 C4H (20) View species results
Steroid pathway 42 13 SMT1/SMT2/SMT3 (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 484 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 112 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
Tmegctg013440_pilon_pilon_pilon0208670 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Tmegctg013530_pilon_pilon_pilon0212320 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Tmegctg013610_pilon_pilon_pilon0224400 Phenylpropanoid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Tmegctg013780_pilon_pilon_pilon0234330 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Tmegctg001200_pilon_pilon_pilon0004190 Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Tmegctg001470_pilon_pilon_pilon0016370 Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Tmegctg001550_pilon_pilon_pilon0039190 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Tmegctg003320_pilon_pilon_pilon0050650 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Tmegctg003460_pilon_pilon_pilon0055760 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Tmegctg003460_pilon_pilon_pilon0055770 Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Tmegctg003500_pilon_pilon_pilon0061880 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Tmegctg005330_pilon_pilon_pilon0080700 Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Tmegctg005360_pilon_pilon_pilon0087050 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Tmegctg005360_pilon_pilon_pilon0089910 Rosmarinic Acid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Tmegctg005360_pilon_pilon_pilon0093230 Rosmarinic Acid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Tmegctg005380_pilon_pilon_pilon0096770 Rosmarinic Acid 4CL low borderline 4CL__00007__sp_Q42524_4CL1_ARATH
Tmegctg005380_pilon_pilon_pilon0100670 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Tmegctg005390_pilon_pilon_pilon0106340 Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Tmegctg005390_pilon_pilon_pilon0106910 Rosmarinic Acid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
Tmegctg007580_pilon_pilon_pilon0118620 Rosmarinic Acid 4CL low borderline 4CL__00013__sp_Q84P23_4CLL9_ARATH
Tmegctg007590_pilon_pilon_pilon0124020 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Tmegctg007610_pilon_pilon_pilon0140140 Rosmarinic Acid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Tmegctg010130_pilon_pilon_pilon0170920 Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Tmegctg012010_pilon_pilon_pilon0181830 Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Tmegctg012010_pilon_pilon_pilon0184740 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Tmegctg012260_pilon_pilon_pilon0191840 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Tmegctg012300_pilon_pilon_pilon0202340 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Tmegctg013440_pilon_pilon_pilon0208670 Rosmarinic Acid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Tmegctg013530_pilon_pilon_pilon0212320 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Tmegctg013610_pilon_pilon_pilon0224400 Rosmarinic Acid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Tmegctg013780_pilon_pilon_pilon0234330 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY