PlantSME Plant secondary metabolism enzyme database

Timmia megapolitana (timmia_megapolitana)

Imported from atlas release summary for Timmia megapolitana.

565
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.37% Terpenoid pathway 25.84% Alkaloid pathway 19.29% Flavonoid pathway 10.97% Rosmarinic acid pathway 10.09% Steroid pathway 7.43%
Family Distribution
BAHD 6.34% POD 5.99% C4H 5.85% 4CL 5.71% C3'H/CYP98A 5.57% NMT 4.09% CYP76 4.02% STR 3.38%
Other Families 59.06%
More Families (94)
F3H 37 2.61% IFS 36 2.54% BR6OX2/CYP85A2 31 2.18% IFR 30 2.11% T3O 28 1.97% PAL 27 1.9% DWF4/CYP90B1 27 1.9% F3'H/CYP75B 26 1.83% GS 25 1.76% CODM/T6ODM 25 1.76% PYKS 23 1.62% IO 22 1.55% CYP71 21 1.48% 7DLGT 20 1.41% UFGT 20 1.41% SMT1/SMT2/SMT3 20 1.41% UGT 20 1.41% CAD 19 1.34% H6H 16 1.13% CSE 15 1.06% CHS 14 0.99% TRI/TRII 13 0.92% F3'5'H/CYP75A 13 0.92% CCR 12 0.85% RAS 12 0.85% SLS 11 0.78% ANR 11 0.78% CAS 11 0.78% SGD 10 0.7% G8O/G8H 10 0.7% NCS 10 0.7% HCT 10 0.7% LAC 9 0.63% DXS 9 0.63% T16H 8 0.56% BBE 8 0.56% CNMT 8 0.56% 8HGO 7 0.49% COR 7 0.49% DFR 7 0.49% SQS/FDFT1 7 0.49% 7DLH 6 0.42% TDC 6 0.42% LAMT 6 0.42% CPR 6 0.42% CYP90D1 6 0.42% DWF5 6 0.42% GGPPS 6 0.42% PMT 5 0.35% FNS 5 0.35% COMT 5 0.35% CPD/CYP90A1 5 0.35% AACT 5 0.35% ANS/LDOX 4 0.28% FPPS 4 0.28% MPO 3 0.21% TYDC_DDC 3 0.21% CHI 3 0.21% TAT 3 0.21% ROT3/CYP90C1 3 0.21% BR6OX1/CYP85A1 3 0.21% CYP51G1 3 0.21% DET2 3 0.21% CMK/IspE 3 0.21% ADC 2 0.14% 6OMT_4OMT_SOMT 2 0.14% CYP80B1 2 0.14% XMT_MXMT_DXMT 2 0.14% F5H/CYP84A 2 0.14% CCoAOMT 2 0.14% SMO1/SMO2 2 0.14% HYD1 2 0.14% MCT/IspD 2 0.14% MVK 2 0.14% MVD 2 0.14% CYP80F1 1 0.07% CYP719 1 0.07% 16OMT 1 0.07% ISY 1 0.07% FLS 1 0.07% HPPR 1 0.07% CPI1 1 0.07% FK 1 0.07% DWF1 1 0.07% SQE 1 0.07% DWF7 1 0.07% HDS/IspG 1 0.07% HMGR 1 0.07% IDI 1 0.07% HMGS 1 0.07% PMK 1 0.07% MDS/IspF 1 0.07% DXR 1 0.07% HDR/IspH 1 0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 149 11 POD (79) View species results
Terpenoid pathway 146 18 BAHD (64) View species results
Alkaloid pathway 109 16 NMT (22) View species results
Flavonoid pathway 62 10 UFGT (17) View species results
Rosmarinic acid pathway 57 7 C4H (20) View species results
Steroid pathway 42 13 SMT1/SMT2/SMT3 (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 484 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 112 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
Tmegctg001210_pilon_pilon_pilon0005160 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Tmegctg001530_pilon_pilon_pilon0021630 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Tmegctg003520_pilon_pilon_pilon0065880 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Tmegctg003520_pilon_pilon_pilon0066740 Flavonoid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Tmegctg007600_pilon_pilon_pilon0128410 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Tmegctg007620_pilon_pilon_pilon0144230 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Tmegctg007620_pilon_pilon_pilon0144250 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Tmegctg012790_pilon_pilon_pilon0204800 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Tmegctg012790_pilon_pilon_pilon0204840 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Tmegctg001210_pilon_pilon_pilon0005160 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Tmegctg001530_pilon_pilon_pilon0021630 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Tmegctg003520_pilon_pilon_pilon0065880 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Tmegctg003520_pilon_pilon_pilon0066740 Phenylpropanoid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Tmegctg007600_pilon_pilon_pilon0128410 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Tmegctg007620_pilon_pilon_pilon0144230 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Tmegctg007620_pilon_pilon_pilon0144250 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Tmegctg012790_pilon_pilon_pilon0204800 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Tmegctg012790_pilon_pilon_pilon0204840 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Tmegctg001210_pilon_pilon_pilon0005160 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Tmegctg001530_pilon_pilon_pilon0021630 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Tmegctg003520_pilon_pilon_pilon0065880 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Tmegctg003520_pilon_pilon_pilon0066740 Rosmarinic Acid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Tmegctg007600_pilon_pilon_pilon0128410 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Tmegctg007620_pilon_pilon_pilon0144230 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Tmegctg007620_pilon_pilon_pilon0144250 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Tmegctg012790_pilon_pilon_pilon0204800 Rosmarinic Acid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Tmegctg012790_pilon_pilon_pilon0204840 Rosmarinic Acid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH