PlantSME Plant secondary metabolism enzyme database

Timmia megapolitana (timmia_megapolitana)

Imported from atlas release summary for Timmia megapolitana.

565
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.37% Terpenoid pathway 25.84% Alkaloid pathway 19.29% Flavonoid pathway 10.97% Rosmarinic acid pathway 10.09% Steroid pathway 7.43%
Family Distribution
BAHD 6.34% POD 5.99% C4H 5.85% 4CL 5.71% C3'H/CYP98A 5.57% NMT 4.09% CYP76 4.02% STR 3.38%
Other Families 59.06%
More Families (94)
F3H 37 2.61% IFS 36 2.54% BR6OX2/CYP85A2 31 2.18% IFR 30 2.11% T3O 28 1.97% PAL 27 1.9% DWF4/CYP90B1 27 1.9% F3'H/CYP75B 26 1.83% GS 25 1.76% CODM/T6ODM 25 1.76% PYKS 23 1.62% IO 22 1.55% CYP71 21 1.48% 7DLGT 20 1.41% UFGT 20 1.41% SMT1/SMT2/SMT3 20 1.41% UGT 20 1.41% CAD 19 1.34% H6H 16 1.13% CSE 15 1.06% CHS 14 0.99% TRI/TRII 13 0.92% F3'5'H/CYP75A 13 0.92% CCR 12 0.85% RAS 12 0.85% SLS 11 0.78% ANR 11 0.78% CAS 11 0.78% SGD 10 0.7% G8O/G8H 10 0.7% NCS 10 0.7% HCT 10 0.7% LAC 9 0.63% DXS 9 0.63% T16H 8 0.56% BBE 8 0.56% CNMT 8 0.56% 8HGO 7 0.49% COR 7 0.49% DFR 7 0.49% SQS/FDFT1 7 0.49% 7DLH 6 0.42% TDC 6 0.42% LAMT 6 0.42% CPR 6 0.42% CYP90D1 6 0.42% DWF5 6 0.42% GGPPS 6 0.42% PMT 5 0.35% FNS 5 0.35% COMT 5 0.35% CPD/CYP90A1 5 0.35% AACT 5 0.35% ANS/LDOX 4 0.28% FPPS 4 0.28% MPO 3 0.21% TYDC_DDC 3 0.21% CHI 3 0.21% TAT 3 0.21% ROT3/CYP90C1 3 0.21% BR6OX1/CYP85A1 3 0.21% CYP51G1 3 0.21% DET2 3 0.21% CMK/IspE 3 0.21% ADC 2 0.14% 6OMT_4OMT_SOMT 2 0.14% CYP80B1 2 0.14% XMT_MXMT_DXMT 2 0.14% F5H/CYP84A 2 0.14% CCoAOMT 2 0.14% SMO1/SMO2 2 0.14% HYD1 2 0.14% MCT/IspD 2 0.14% MVK 2 0.14% MVD 2 0.14% CYP80F1 1 0.07% CYP719 1 0.07% 16OMT 1 0.07% ISY 1 0.07% FLS 1 0.07% HPPR 1 0.07% CPI1 1 0.07% FK 1 0.07% DWF1 1 0.07% SQE 1 0.07% DWF7 1 0.07% HDS/IspG 1 0.07% HMGR 1 0.07% IDI 1 0.07% HMGS 1 0.07% PMK 1 0.07% MDS/IspF 1 0.07% DXR 1 0.07% HDR/IspH 1 0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 149 11 POD (79) View species results
Terpenoid pathway 146 18 BAHD (64) View species results
Alkaloid pathway 109 16 NMT (22) View species results
Flavonoid pathway 62 10 UFGT (17) View species results
Rosmarinic acid pathway 57 7 C4H (20) View species results
Steroid pathway 42 13 SMT1/SMT2/SMT3 (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 484 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 112 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
Reset
Gene Pathway Family Confidence Status Best Target
Tmegctg001210_pilon_pilon_pilon0006970 Alkaloid NMT low borderline NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Tmegctg001300_pilon_pilon_pilon0010700 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Tmegctg001300_pilon_pilon_pilon0013750 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Tmegctg001400_pilon_pilon_pilon0013920 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
Tmegctg001470_pilon_pilon_pilon0014810 Alkaloid NMT low borderline NMT__00021__sp_O64827_SUVR5_ARATH
Tmegctg001540_pilon_pilon_pilon0022750 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Tmegctg001540_pilon_pilon_pilon0025170 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tmegctg001540_pilon_pilon_pilon0026040 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
Tmegctg001550_pilon_pilon_pilon0032450 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Tmegctg001550_pilon_pilon_pilon0033700 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
Tmegctg001550_pilon_pilon_pilon0033840 Alkaloid NMT medium pass NMT__00030__sp_Q43088_RBCMT_PEA
Tmegctg001550_pilon_pilon_pilon0040090 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Tmegctg001550_pilon_pilon_pilon0040110 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Tmegctg001560_pilon_pilon_pilon0041840 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Tmegctg002320_pilon_pilon_pilon0045060 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
Tmegctg003240_pilon_pilon_pilon0049040 Alkaloid NMT low borderline NMT__00020__sp_O23372_ATXR3_ARATH
Tmegctg003320_pilon_pilon_pilon0050770 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Tmegctg003460_pilon_pilon_pilon0055420 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Tmegctg003460_pilon_pilon_pilon0055890 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
Tmegctg003460_pilon_pilon_pilon0056900 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tmegctg003520_pilon_pilon_pilon0071860 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Tmegctg003520_pilon_pilon_pilon0074160 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Tmegctg005240_pilon_pilon_pilon0078390 Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Tmegctg005330_pilon_pilon_pilon0082640 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Tmegctg005360_pilon_pilon_pilon0086150 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Tmegctg005360_pilon_pilon_pilon0086420 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Tmegctg005360_pilon_pilon_pilon0090940 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Tmegctg005360_pilon_pilon_pilon0095100 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Tmegctg005380_pilon_pilon_pilon0104820 Alkaloid NMT low borderline NMT__00021__sp_O64827_SUVR5_ARATH
Tmegctg007580_pilon_pilon_pilon0115530 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Tmegctg007580_pilon_pilon_pilon0116290 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Tmegctg007580_pilon_pilon_pilon0116600 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
Tmegctg007580_pilon_pilon_pilon0118020 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Tmegctg007600_pilon_pilon_pilon0132790 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Tmegctg007600_pilon_pilon_pilon0135220 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Tmegctg007600_pilon_pilon_pilon0135240 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Tmegctg007600_pilon_pilon_pilon0138040 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH
Tmegctg007610_pilon_pilon_pilon0138360 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Tmegctg007620_pilon_pilon_pilon0144940 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
Tmegctg008660_pilon_pilon_pilon0153890 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
Tmegctg010130_pilon_pilon_pilon0167990 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
Tmegctg010130_pilon_pilon_pilon0169970 Alkaloid NMT medium pass NMT__00023__sp_O82210_ANM12_ARATH
Tmegctg010140_pilon_pilon_pilon0171380 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Tmegctg010140_pilon_pilon_pilon0175460 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Tmegctg010140_pilon_pilon_pilon0176000 Alkaloid NMT medium borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
Tmegctg012010_pilon_pilon_pilon0185310 Alkaloid NMT low borderline NMT__00021__sp_O64827_SUVR5_ARATH
Tmegctg012260_pilon_pilon_pilon0188840 Alkaloid NMT low borderline NMT__00039__sp_Q84W92_ANM13_ARATH
Tmegctg012290_pilon_pilon_pilon0192590 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Tmegctg012290_pilon_pilon_pilon0193020 Alkaloid NMT low borderline NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Tmegctg012290_pilon_pilon_pilon0197510 Alkaloid NMT medium pass NMT__00057__sp_Q9FR44_PEAM1_ARATH