Timmia megapolitana (timmia_megapolitana)
Imported from atlas release summary for Timmia megapolitana.
565
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
565
Candidate Genes
BAHD
6.34%
POD
5.99%
C4H
5.85%
4CL
5.71%
C3'H/CYP98A
5.57%
NMT
4.09%
CYP76
4.02%
STR
3.38%
Other Families
59.06%
More Families (94)
F3H
37
2.61%
IFS
36
2.54%
BR6OX2/CYP85A2
31
2.18%
IFR
30
2.11%
T3O
28
1.97%
PAL
27
1.9%
DWF4/CYP90B1
27
1.9%
F3'H/CYP75B
26
1.83%
GS
25
1.76%
CODM/T6ODM
25
1.76%
PYKS
23
1.62%
IO
22
1.55%
CYP71
21
1.48%
7DLGT
20
1.41%
UFGT
20
1.41%
SMT1/SMT2/SMT3
20
1.41%
UGT
20
1.41%
CAD
19
1.34%
H6H
16
1.13%
CSE
15
1.06%
CHS
14
0.99%
TRI/TRII
13
0.92%
F3'5'H/CYP75A
13
0.92%
CCR
12
0.85%
RAS
12
0.85%
SLS
11
0.78%
ANR
11
0.78%
CAS
11
0.78%
SGD
10
0.7%
G8O/G8H
10
0.7%
NCS
10
0.7%
HCT
10
0.7%
LAC
9
0.63%
DXS
9
0.63%
T16H
8
0.56%
BBE
8
0.56%
CNMT
8
0.56%
8HGO
7
0.49%
COR
7
0.49%
DFR
7
0.49%
SQS/FDFT1
7
0.49%
7DLH
6
0.42%
TDC
6
0.42%
LAMT
6
0.42%
CPR
6
0.42%
CYP90D1
6
0.42%
DWF5
6
0.42%
GGPPS
6
0.42%
PMT
5
0.35%
FNS
5
0.35%
COMT
5
0.35%
CPD/CYP90A1
5
0.35%
AACT
5
0.35%
ANS/LDOX
4
0.28%
FPPS
4
0.28%
MPO
3
0.21%
TYDC_DDC
3
0.21%
CHI
3
0.21%
TAT
3
0.21%
ROT3/CYP90C1
3
0.21%
BR6OX1/CYP85A1
3
0.21%
CYP51G1
3
0.21%
DET2
3
0.21%
CMK/IspE
3
0.21%
ADC
2
0.14%
6OMT_4OMT_SOMT
2
0.14%
CYP80B1
2
0.14%
XMT_MXMT_DXMT
2
0.14%
F5H/CYP84A
2
0.14%
CCoAOMT
2
0.14%
SMO1/SMO2
2
0.14%
HYD1
2
0.14%
MCT/IspD
2
0.14%
MVK
2
0.14%
MVD
2
0.14%
CYP80F1
1
0.07%
CYP719
1
0.07%
16OMT
1
0.07%
ISY
1
0.07%
FLS
1
0.07%
HPPR
1
0.07%
CPI1
1
0.07%
FK
1
0.07%
DWF1
1
0.07%
SQE
1
0.07%
DWF7
1
0.07%
HDS/IspG
1
0.07%
HMGR
1
0.07%
IDI
1
0.07%
HMGS
1
0.07%
PMK
1
0.07%
MDS/IspF
1
0.07%
DXR
1
0.07%
HDR/IspH
1
0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 149 | 11 | POD (79) | View species results |
| Terpenoid pathway | 146 | 18 | BAHD (64) | View species results |
| Alkaloid pathway | 109 | 16 | NMT (22) | View species results |
| Flavonoid pathway | 62 | 10 | UFGT (17) | View species results |
| Rosmarinic acid pathway | 57 | 7 | C4H (20) | View species results |
| Steroid pathway | 42 | 13 | SMT1/SMT2/SMT3 (10) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 484 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 112 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Tmegctg001540_pilon_pilon_pilon0024060 | Alkaloid | IO | medium | borderline |
| Tmegctg002320_pilon_pilon_pilon0045930 | Alkaloid | IO | medium | borderline |
| Tmegctg003500_pilon_pilon_pilon0060220 | Alkaloid | IO | medium | borderline |
| Tmegctg003500_pilon_pilon_pilon0062670 | Alkaloid | IO | medium | borderline |
| Tmegctg004510_pilon_pilon_pilon0075060 | Alkaloid | IO | medium | borderline |
| Tmegctg005360_pilon_pilon_pilon0084280 | Alkaloid | IO | low | borderline |
| Tmegctg005360_pilon_pilon_pilon0085220 | Alkaloid | IO | medium | borderline |
| Tmegctg007600_pilon_pilon_pilon0128090 | Alkaloid | IO | medium | borderline |
| Tmegctg007600_pilon_pilon_pilon0128100 | Alkaloid | IO | medium | borderline |
| Tmegctg007600_pilon_pilon_pilon0128110 | Alkaloid | IO | medium | borderline |
| Tmegctg007600_pilon_pilon_pilon0128120 | Alkaloid | IO | medium | borderline |
| Tmegctg007610_pilon_pilon_pilon0139240 | Alkaloid | IO | medium | borderline |
| Tmegctg007620_pilon_pilon_pilon0144180 | Alkaloid | IO | medium | borderline |
| Tmegctg007620_pilon_pilon_pilon0146740 | Alkaloid | IO | medium | borderline |
| Tmegctg007620_pilon_pilon_pilon0148750 | Alkaloid | IO | medium | borderline |
| Tmegctg007620_pilon_pilon_pilon0148920 | Alkaloid | IO | medium | borderline |
| Tmegctg010090_pilon_pilon_pilon0162210 | Alkaloid | IO | medium | borderline |
| Tmegctg010780_pilon_pilon_pilon0177850 | Alkaloid | IO | medium | borderline |
| Tmegctg012290_pilon_pilon_pilon0196310 | Alkaloid | IO | medium | borderline |
| Tmegctg012290_pilon_pilon_pilon0198160 | Alkaloid | IO | medium | borderline |
| Tmegctg012290_pilon_pilon_pilon0198170 | Alkaloid | IO | medium | borderline |
| Tmegctg013810_pilon_pilon_pilon0248550 | Alkaloid | IO | low | borderline |