PlantSME Plant secondary metabolism enzyme database

Timmia megapolitana (timmia_megapolitana)

Imported from atlas release summary for Timmia megapolitana.

565
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.37% Terpenoid pathway 25.84% Alkaloid pathway 19.29% Flavonoid pathway 10.97% Rosmarinic acid pathway 10.09% Steroid pathway 7.43%
Family Distribution
BAHD 6.34% POD 5.99% C4H 5.85% 4CL 5.71% C3'H/CYP98A 5.57% NMT 4.09% CYP76 4.02% STR 3.38%
Other Families 59.06%
More Families (94)
F3H 37 2.61% IFS 36 2.54% BR6OX2/CYP85A2 31 2.18% IFR 30 2.11% T3O 28 1.97% PAL 27 1.9% DWF4/CYP90B1 27 1.9% F3'H/CYP75B 26 1.83% GS 25 1.76% CODM/T6ODM 25 1.76% PYKS 23 1.62% IO 22 1.55% CYP71 21 1.48% 7DLGT 20 1.41% UFGT 20 1.41% SMT1/SMT2/SMT3 20 1.41% UGT 20 1.41% CAD 19 1.34% H6H 16 1.13% CSE 15 1.06% CHS 14 0.99% TRI/TRII 13 0.92% F3'5'H/CYP75A 13 0.92% CCR 12 0.85% RAS 12 0.85% SLS 11 0.78% ANR 11 0.78% CAS 11 0.78% SGD 10 0.7% G8O/G8H 10 0.7% NCS 10 0.7% HCT 10 0.7% LAC 9 0.63% DXS 9 0.63% T16H 8 0.56% BBE 8 0.56% CNMT 8 0.56% 8HGO 7 0.49% COR 7 0.49% DFR 7 0.49% SQS/FDFT1 7 0.49% 7DLH 6 0.42% TDC 6 0.42% LAMT 6 0.42% CPR 6 0.42% CYP90D1 6 0.42% DWF5 6 0.42% GGPPS 6 0.42% PMT 5 0.35% FNS 5 0.35% COMT 5 0.35% CPD/CYP90A1 5 0.35% AACT 5 0.35% ANS/LDOX 4 0.28% FPPS 4 0.28% MPO 3 0.21% TYDC_DDC 3 0.21% CHI 3 0.21% TAT 3 0.21% ROT3/CYP90C1 3 0.21% BR6OX1/CYP85A1 3 0.21% CYP51G1 3 0.21% DET2 3 0.21% CMK/IspE 3 0.21% ADC 2 0.14% 6OMT_4OMT_SOMT 2 0.14% CYP80B1 2 0.14% XMT_MXMT_DXMT 2 0.14% F5H/CYP84A 2 0.14% CCoAOMT 2 0.14% SMO1/SMO2 2 0.14% HYD1 2 0.14% MCT/IspD 2 0.14% MVK 2 0.14% MVD 2 0.14% CYP80F1 1 0.07% CYP719 1 0.07% 16OMT 1 0.07% ISY 1 0.07% FLS 1 0.07% HPPR 1 0.07% CPI1 1 0.07% FK 1 0.07% DWF1 1 0.07% SQE 1 0.07% DWF7 1 0.07% HDS/IspG 1 0.07% HMGR 1 0.07% IDI 1 0.07% HMGS 1 0.07% PMK 1 0.07% MDS/IspF 1 0.07% DXR 1 0.07% HDR/IspH 1 0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 149 11 POD (79) View species results
Terpenoid pathway 146 18 BAHD (64) View species results
Alkaloid pathway 109 16 NMT (22) View species results
Flavonoid pathway 62 10 UFGT (17) View species results
Rosmarinic acid pathway 57 7 C4H (20) View species results
Steroid pathway 42 13 SMT1/SMT2/SMT3 (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 484 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 112 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Gene Pathway Family Confidence Status
Tmegctg000440_pilon_pilon_pilon0001140 Alkaloid H6H low borderline
Tmegctg001470_pilon_pilon_pilon0018370 Alkaloid H6H medium borderline
Tmegctg001550_pilon_pilon_pilon0038470 Alkaloid H6H medium borderline
Tmegctg002520_pilon_pilon_pilon0048070 Alkaloid H6H medium borderline
Tmegctg003460_pilon_pilon_pilon0056220 Alkaloid H6H medium borderline
Tmegctg003500_pilon_pilon_pilon0063250 Alkaloid H6H medium borderline
Tmegctg005360_pilon_pilon_pilon0091850 Alkaloid H6H low borderline
Tmegctg005360_pilon_pilon_pilon0091880 Alkaloid H6H medium pass
Tmegctg005380_pilon_pilon_pilon0098840 Alkaloid H6H high pass
Tmegctg006160_pilon_pilon_pilon0110130 Alkaloid H6H low borderline
Tmegctg007580_pilon_pilon_pilon0116750 Alkaloid H6H medium pass
Tmegctg007620_pilon_pilon_pilon0142480 Alkaloid H6H medium borderline
Tmegctg009160_pilon_pilon_pilon0158930 Alkaloid H6H medium borderline
Tmegctg010780_pilon_pilon_pilon0180430 Alkaloid H6H low borderline
Tmegctg012260_pilon_pilon_pilon0191170 Alkaloid H6H low borderline
Tmegctg013780_pilon_pilon_pilon0236860 Alkaloid H6H medium borderline