PlantSME Plant secondary metabolism enzyme database

Timmia megapolitana (timmia_megapolitana)

Imported from atlas release summary for Timmia megapolitana.

565
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.37% Terpenoid pathway 25.84% Alkaloid pathway 19.29% Flavonoid pathway 10.97% Rosmarinic acid pathway 10.09% Steroid pathway 7.43%
Family Distribution
BAHD 6.34% POD 5.99% C4H 5.85% 4CL 5.71% C3'H/CYP98A 5.57% NMT 4.09% CYP76 4.02% STR 3.38%
Other Families 59.06%
More Families (94)
F3H 37 2.61% IFS 36 2.54% BR6OX2/CYP85A2 31 2.18% IFR 30 2.11% T3O 28 1.97% PAL 27 1.9% DWF4/CYP90B1 27 1.9% F3'H/CYP75B 26 1.83% GS 25 1.76% CODM/T6ODM 25 1.76% PYKS 23 1.62% IO 22 1.55% CYP71 21 1.48% 7DLGT 20 1.41% UFGT 20 1.41% SMT1/SMT2/SMT3 20 1.41% UGT 20 1.41% CAD 19 1.34% H6H 16 1.13% CSE 15 1.06% CHS 14 0.99% TRI/TRII 13 0.92% F3'5'H/CYP75A 13 0.92% CCR 12 0.85% RAS 12 0.85% SLS 11 0.78% ANR 11 0.78% CAS 11 0.78% SGD 10 0.7% G8O/G8H 10 0.7% NCS 10 0.7% HCT 10 0.7% LAC 9 0.63% DXS 9 0.63% T16H 8 0.56% BBE 8 0.56% CNMT 8 0.56% 8HGO 7 0.49% COR 7 0.49% DFR 7 0.49% SQS/FDFT1 7 0.49% 7DLH 6 0.42% TDC 6 0.42% LAMT 6 0.42% CPR 6 0.42% CYP90D1 6 0.42% DWF5 6 0.42% GGPPS 6 0.42% PMT 5 0.35% FNS 5 0.35% COMT 5 0.35% CPD/CYP90A1 5 0.35% AACT 5 0.35% ANS/LDOX 4 0.28% FPPS 4 0.28% MPO 3 0.21% TYDC_DDC 3 0.21% CHI 3 0.21% TAT 3 0.21% ROT3/CYP90C1 3 0.21% BR6OX1/CYP85A1 3 0.21% CYP51G1 3 0.21% DET2 3 0.21% CMK/IspE 3 0.21% ADC 2 0.14% 6OMT_4OMT_SOMT 2 0.14% CYP80B1 2 0.14% XMT_MXMT_DXMT 2 0.14% F5H/CYP84A 2 0.14% CCoAOMT 2 0.14% SMO1/SMO2 2 0.14% HYD1 2 0.14% MCT/IspD 2 0.14% MVK 2 0.14% MVD 2 0.14% CYP80F1 1 0.07% CYP719 1 0.07% 16OMT 1 0.07% ISY 1 0.07% FLS 1 0.07% HPPR 1 0.07% CPI1 1 0.07% FK 1 0.07% DWF1 1 0.07% SQE 1 0.07% DWF7 1 0.07% HDS/IspG 1 0.07% HMGR 1 0.07% IDI 1 0.07% HMGS 1 0.07% PMK 1 0.07% MDS/IspF 1 0.07% DXR 1 0.07% HDR/IspH 1 0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 149 11 POD (79) View species results
Terpenoid pathway 146 18 BAHD (64) View species results
Alkaloid pathway 109 16 NMT (22) View species results
Flavonoid pathway 62 10 UFGT (17) View species results
Rosmarinic acid pathway 57 7 C4H (20) View species results
Steroid pathway 42 13 SMT1/SMT2/SMT3 (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 484 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 112 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status Best Target
Tmegctg007580_pilon_pilon_pilon0115490 Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
Tmegctg007580_pilon_pilon_pilon0117020 Terpenoid BAHD low borderline BAHD__00018__sp_I1MRZ6_DAT32_SOYBN
Tmegctg007580_pilon_pilon_pilon0118680 Terpenoid BAHD medium pass BAHD__00052__sp_Q8GWG0_GPAT9_ARATH
Tmegctg007590_pilon_pilon_pilon0123040 Terpenoid BAHD medium pass BAHD__00068__sp_Q9C533_ZDHC1_ARATH
Tmegctg007590_pilon_pilon_pilon0125440 Terpenoid BAHD medium pass BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH
Tmegctg007600_pilon_pilon_pilon0126240 Terpenoid BAHD medium pass BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
Tmegctg007600_pilon_pilon_pilon0131370 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
Tmegctg007600_pilon_pilon_pilon0132050 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Tmegctg007600_pilon_pilon_pilon0134410 Terpenoid BAHD medium pass BAHD__00022__sp_K7PEY4_RAM2_MEDTR
Tmegctg007610_pilon_pilon_pilon0141690 Terpenoid BAHD medium pass BAHD__00058__sp_Q8LG50_LPAT2_ARATH
Tmegctg007610_pilon_pilon_pilon0142320 Terpenoid BAHD medium pass BAHD__00082__sp_Q9LLY4_LPAT1_BRANA
Tmegctg007620_pilon_pilon_pilon0142610 Terpenoid BAHD low borderline BAHD__00093__sp_Q9SV07_ASAT1_ARATH
Tmegctg007620_pilon_pilon_pilon0147410 Terpenoid BAHD medium pass BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH
Tmegctg007620_pilon_pilon_pilon0148950 Terpenoid BAHD medium pass BAHD__00017__sp_F4IDU4_MBOA1_ARATH
Tmegctg007620_pilon_pilon_pilon0148990 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Tmegctg007620_pilon_pilon_pilon0149000 Terpenoid BAHD low borderline BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC
Tmegctg007620_pilon_pilon_pilon0149670 Terpenoid BAHD medium pass BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH
Tmegctg008670_pilon_pilon_pilon0155260 Terpenoid BAHD medium pass BAHD__00004__sp_A0A0M4FCN7_RAM2_PETHY
Tmegctg009160_pilon_pilon_pilon0158070 Terpenoid BAHD medium pass BAHD__00022__sp_K7PEY4_RAM2_MEDTR
Tmegctg009160_pilon_pilon_pilon0159130 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
Tmegctg010090_pilon_pilon_pilon0161540 Terpenoid BAHD medium pass BAHD__00062__sp_Q93V61_LCAT3_ARATH
Tmegctg010140_pilon_pilon_pilon0175470 Terpenoid BAHD low borderline BAHD__00097__sp_Q9ZV87_NAPES_ARATH
Tmegctg010140_pilon_pilon_pilon0176820 Terpenoid BAHD medium pass BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH
Tmegctg010710_pilon_pilon_pilon0177770 Terpenoid BAHD medium pass BAHD__00057__sp_Q8L7R3_LPCT1_ARATH
Tmegctg011030_pilon_pilon_pilon0181610 Terpenoid BAHD low borderline BAHD__00082__sp_Q9LLY4_LPAT1_BRANA
Tmegctg012010_pilon_pilon_pilon0182870 Terpenoid BAHD medium pass BAHD__00034__sp_P10349_GPAT2_CUCMO
Tmegctg012010_pilon_pilon_pilon0184700 Terpenoid BAHD medium pass BAHD__00063__sp_Q93VV0_ZDHC6_ARATH
Tmegctg012260_pilon_pilon_pilon0188360 Terpenoid BAHD medium pass BAHD__00041__sp_Q4VCM1_LCAT2_ARATH
Tmegctg012260_pilon_pilon_pilon0189920 Terpenoid BAHD medium pass BAHD__00040__sp_Q41745_LPAT_MAIZE
Tmegctg012290_pilon_pilon_pilon0195480 Terpenoid BAHD low borderline BAHD__00093__sp_Q9SV07_ASAT1_ARATH
Tmegctg012290_pilon_pilon_pilon0197200 Terpenoid BAHD low borderline BAHD__00014__sp_B9RK42_GPC1_RICCO
Tmegctg012290_pilon_pilon_pilon0198590 Terpenoid BAHD medium pass BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH
Tmegctg012300_pilon_pilon_pilon0199300 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Tmegctg012300_pilon_pilon_pilon0203000 Terpenoid BAHD medium pass BAHD__00043__sp_Q52T38_ZDH22_ARATH
Tmegctg012790_pilon_pilon_pilon0204960 Terpenoid BAHD medium pass BAHD__00022__sp_K7PEY4_RAM2_MEDTR
Tmegctg013440_pilon_pilon_pilon0210810 Terpenoid BAHD medium pass BAHD__00027__sp_O80437_GPAT6_ARATH
Tmegctg013560_pilon_pilon_pilon0218180 Terpenoid BAHD medium pass BAHD__00068__sp_Q9C533_ZDHC1_ARATH
Tmegctg013560_pilon_pilon_pilon0218320 Terpenoid BAHD low borderline BAHD__00050__sp_Q6DR03_ZDHC3_ARATH
Tmegctg013560_pilon_pilon_pilon0219020 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Tmegctg013760_pilon_pilon_pilon0229960 Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
Tmegctg013760_pilon_pilon_pilon0229980 Terpenoid BAHD medium pass BAHD__00067__sp_Q9ASU1_DGAT2_ARATH
Tmegctg013760_pilon_pilon_pilon0231000 Terpenoid BAHD low borderline BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
Tmegctg013780_pilon_pilon_pilon0238890 Terpenoid BAHD medium pass BAHD__00017__sp_F4IDU4_MBOA1_ARATH
Tmegctg013780_pilon_pilon_pilon0239420 Terpenoid BAHD medium pass BAHD__00074__sp_Q9FFQ7_FACT_ARATH
Tmegctg013790_pilon_pilon_pilon0245610 Terpenoid BAHD medium pass BAHD__00087__sp_Q9M3B1_WSD6_ARATH
Tmegctg002300_pilon_pilon_pilon0042890 Terpenoid CMK/IspE high pass CMK_IspE__00001__sp_O81014_ISPE_ARATH
Tmegctg002520_pilon_pilon_pilon0047490 Terpenoid CMK/IspE medium pass CMK_IspE__00001__sp_O81014_ISPE_ARATH
Tmegctg007620_pilon_pilon_pilon0143740 Terpenoid CMK/IspE medium pass CMK_IspE__00001__sp_O81014_ISPE_ARATH
Tmegctg001470_pilon_pilon_pilon0019190 Terpenoid CYP71 low borderline CYP71__00001__sp_Q8W4D0_CPY71_ARATH
Tmegctg002520_pilon_pilon_pilon0046960 Terpenoid CYP71 low borderline CYP71__00001__sp_Q8W4D0_CPY71_ARATH