Timmia megapolitana (timmia_megapolitana)
Imported from atlas release summary for Timmia megapolitana.
814
Candidate Protein Records
565
Pathway-Level Records
1419
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1419
Family-Level Calls
BAHD
6.34%
POD
5.99%
C4H
5.85%
4CL
5.71%
C3'H/CYP98A
5.57%
NMT
4.09%
CYP76
4.02%
STR
3.38%
Other Families
59.06%
More Families (94)
F3H
37
2.61%
IFS
36
2.54%
BR6OX2/CYP85A2
31
2.18%
IFR
30
2.11%
T3O
28
1.97%
PAL
27
1.9%
DWF4/CYP90B1
27
1.9%
F3'H/CYP75B
26
1.83%
GS
25
1.76%
CODM/T6ODM
25
1.76%
PYKS
23
1.62%
IO
22
1.55%
CYP71
21
1.48%
7DLGT
20
1.41%
UFGT
20
1.41%
SMT1/SMT2/SMT3
20
1.41%
UGT
20
1.41%
CAD
19
1.34%
H6H
16
1.13%
CSE
15
1.06%
CHS
14
0.99%
TRI/TRII
13
0.92%
F3'5'H/CYP75A
13
0.92%
CCR
12
0.85%
RAS
12
0.85%
SLS
11
0.78%
ANR
11
0.78%
CAS
11
0.78%
SGD
10
0.7%
G8O/G8H
10
0.7%
NCS
10
0.7%
HCT
10
0.7%
LAC
9
0.63%
DXS
9
0.63%
T16H
8
0.56%
BBE
8
0.56%
CNMT
8
0.56%
8HGO
7
0.49%
COR
7
0.49%
DFR
7
0.49%
SQS/FDFT1
7
0.49%
7DLH
6
0.42%
TDC
6
0.42%
LAMT
6
0.42%
CPR
6
0.42%
CYP90D1
6
0.42%
DWF5
6
0.42%
GGPPS
6
0.42%
PMT
5
0.35%
FNS
5
0.35%
COMT
5
0.35%
CPD/CYP90A1
5
0.35%
AACT
5
0.35%
ANS/LDOX
4
0.28%
FPPS
4
0.28%
MPO
3
0.21%
TYDC_DDC
3
0.21%
CHI
3
0.21%
TAT
3
0.21%
ROT3/CYP90C1
3
0.21%
BR6OX1/CYP85A1
3
0.21%
CYP51G1
3
0.21%
DET2
3
0.21%
CMK/IspE
3
0.21%
ADC
2
0.14%
6OMT_4OMT_SOMT
2
0.14%
CYP80B1
2
0.14%
XMT_MXMT_DXMT
2
0.14%
F5H/CYP84A
2
0.14%
CCoAOMT
2
0.14%
SMO1/SMO2
2
0.14%
HYD1
2
0.14%
MCT/IspD
2
0.14%
MVK
2
0.14%
MVD
2
0.14%
CYP80F1
1
0.07%
CYP719
1
0.07%
16OMT
1
0.07%
ISY
1
0.07%
FLS
1
0.07%
HPPR
1
0.07%
CPI1
1
0.07%
FK
1
0.07%
DWF1
1
0.07%
SQE
1
0.07%
DWF7
1
0.07%
HDS/IspG
1
0.07%
HMGR
1
0.07%
IDI
1
0.07%
HMGS
1
0.07%
PMK
1
0.07%
MDS/IspF
1
0.07%
DXR
1
0.07%
HDR/IspH
1
0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 149 | 11 | POD (79) | View species results |
| Terpenoid pathway | 146 | 18 | BAHD (64) | View species results |
| Alkaloid pathway | 109 | 16 | NMT (22) | View species results |
| Flavonoid pathway | 62 | 10 | UFGT (17) | View species results |
| Rosmarinic acid pathway | 57 | 7 | C4H (20) | View species results |
| Steroid pathway | 42 | 13 | SMT1/SMT2/SMT3 (10) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 484 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 112 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Tmegctg001550_pilon_pilon_pilon0035430 | Alkaloid | T3O | low | borderline |
| Tmegctg003460_pilon_pilon_pilon0055840 | Alkaloid | T3O | medium | borderline |
| Tmegctg003520_pilon_pilon_pilon0067650 | Alkaloid | T3O | low | borderline |
| Tmegctg003520_pilon_pilon_pilon0067680 | Alkaloid | T3O | low | borderline |
| Tmegctg005360_pilon_pilon_pilon0091690 | Alkaloid | T3O | medium | borderline |
| Tmegctg005360_pilon_pilon_pilon0091790 | Alkaloid | T3O | medium | borderline |
| Tmegctg005360_pilon_pilon_pilon0093130 | Alkaloid | T3O | medium | pass |
| Tmegctg005380_pilon_pilon_pilon0104650 | Alkaloid | T3O | medium | borderline |
| Tmegctg007580_pilon_pilon_pilon0114950 | Alkaloid | T3O | medium | pass |
| Tmegctg007590_pilon_pilon_pilon0122870 | Alkaloid | T3O | medium | pass |
| Tmegctg007600_pilon_pilon_pilon0131840 | Alkaloid | T3O | medium | pass |
| Tmegctg007600_pilon_pilon_pilon0135770 | Alkaloid | T3O | medium | borderline |
| Tmegctg007600_pilon_pilon_pilon0136370 | Alkaloid | T3O | medium | borderline |
| Tmegctg007610_pilon_pilon_pilon0141050 | Alkaloid | T3O | medium | borderline |
| Tmegctg007620_pilon_pilon_pilon0144570 | Alkaloid | T3O | medium | borderline |
| Tmegctg008490_pilon_pilon_pilon0152690 | Alkaloid | T3O | medium | pass |
| Tmegctg008660_pilon_pilon_pilon0153320 | Alkaloid | T3O | medium | pass |
| Tmegctg008670_pilon_pilon_pilon0155220 | Alkaloid | T3O | low | borderline |
| Tmegctg012680_pilon_pilon_pilon0204200 | Alkaloid | T3O | medium | pass |
| Tmegctg013440_pilon_pilon_pilon0210010 | Alkaloid | T3O | medium | borderline |
| Tmegctg013530_pilon_pilon_pilon0211630 | Alkaloid | T3O | medium | borderline |
| Tmegctg013560_pilon_pilon_pilon0219510 | Alkaloid | T3O | low | borderline |
| Tmegctg013610_pilon_pilon_pilon0224680 | Alkaloid | T3O | medium | borderline |
| Tmegctg013790_pilon_pilon_pilon0242570 | Alkaloid | T3O | medium | borderline |
| Tmegctg001550_pilon_pilon_pilon0029560 | Alkaloid | TDC | low | borderline |
| Tmegctg001550_pilon_pilon_pilon0032570 | Alkaloid | TDC | low | borderline |
| Tmegctg002520_pilon_pilon_pilon0047810 | Alkaloid | TDC | low | borderline |
| Tmegctg012290_pilon_pilon_pilon0192780 | Alkaloid | TDC | medium | borderline |
| Tmegctg012290_pilon_pilon_pilon0192790 | Alkaloid | TDC | low | borderline |
| Tmegctg012300_pilon_pilon_pilon0200380 | Alkaloid | TDC | low | borderline |
| Tmegctg001470_pilon_pilon_pilon0017430 | Alkaloid | TRI/TRII | low | borderline |
| Tmegctg002320_pilon_pilon_pilon0045260 | Alkaloid | TRI/TRII | low | borderline |
| Tmegctg005330_pilon_pilon_pilon0080330 | Alkaloid | TRI/TRII | medium | pass |
| Tmegctg005360_pilon_pilon_pilon0085310 | Alkaloid | TRI/TRII | medium | pass |
| Tmegctg007580_pilon_pilon_pilon0118220 | Alkaloid | TRI/TRII | medium | pass |
| Tmegctg010130_pilon_pilon_pilon0170270 | Alkaloid | TRI/TRII | medium | pass |
| Tmegctg012290_pilon_pilon_pilon0197240 | Alkaloid | TRI/TRII | low | borderline |
| Tmegctg013420_pilon_pilon_pilon0208090 | Alkaloid | TRI/TRII | medium | pass |
| Tmegctg013550_pilon_pilon_pilon0214680 | Alkaloid | TRI/TRII | low | borderline |
| Tmegctg013560_pilon_pilon_pilon0217590 | Alkaloid | TRI/TRII | medium | pass |
| Tmegctg013610_pilon_pilon_pilon0223940 | Alkaloid | TRI/TRII | medium | pass |
| Tmegctg013780_pilon_pilon_pilon0236280 | Alkaloid | TRI/TRII | low | borderline |
| Tmegctg013790_pilon_pilon_pilon0241920 | Alkaloid | TRI/TRII | medium | pass |
| Tmegctg003460_pilon_pilon_pilon0056350 | Alkaloid | TYDC_DDC | medium | borderline |
| Tmegctg012290_pilon_pilon_pilon0192940 | Alkaloid | TYDC_DDC | medium | borderline |
| Tmegctg013610_pilon_pilon_pilon0224930 | Alkaloid | TYDC_DDC | low | borderline |
| Tmegctg010140_pilon_pilon_pilon0175820 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |
| Tmegctg012010_pilon_pilon_pilon0186420 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |