PlantSME Plant secondary metabolism enzyme database
TDC

TDC

Atlas summary family TDC.

Lineage Coverage
Detected in 29 of 789 public species; click a lineage to inspect its species list.
Algae
Bryophytes
Lycophytes/Ferns
Gymnosperms
Basal angiosperms
Monocots
Eudicots
Species Distribution
Miscanthus lutarioriparius
Chrysanthemum seticuspe
Zoysia matrella
Aegilops tauschii
Related Modules
Alkaloid pathway
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Alkaloid pathway 33 current-family members Facchini 2001; Hagel & Facchini 2013; Guirimand et al. 2014; Shoji et al. 2024; Ashihara et al. 2008
BIA benzylisoquinoline entry
TYDC_DDC 49 NCS 2188 6OMT_4OMT_SOMT 585 CNMT 1103 CYP80B1 109
BIA downstream branches
CYP719 57 COR 12777 CODM/T6ODM 213
MIA terpenoid and indole precursors
GES 29176 G8O/G8H 1896 8HGO 1497 ISY 4217 IO 1721 7DLGT 55281 7DLH 341 LAMT 943 SLS 426 TDC 33
MIA post-strictosidine branches
STR 16085 SGD 25978 GS 15620 T16H 895 16OMT 111 T3O 29276 NMT 40796
Nicotine, tropane, and purine branches
ODC 1268 ADC 2008 PMT 9370 MPO 6100 PYKS 11713 TRI/TRII 28608 H6H 6749 CYP80F1 15 XMT_MXMT_DXMT 70
Family Gene List
GeneSpeciesProtein ID
Rgor779560082960.1 roridula_gorgonias Rgor779560082960.1
Rgor784040097010.1 roridula_gorgonias Rgor784040097010.1
ROchi06G0023970.1 rosa_chinensis ROchi06G0023970.1
RmulRmu_sc0003665.10318790.v1.475 rosa_multiflora RmulRmu_sc0003665.10318790.v1.475
RmulRmu_sc0019237.10568120.v1.475 rosa_multiflora RmulRmu_sc0019237.10568120.v1.475
RmulRmu_sc0041940.10631770.v1.475 rosa_multiflora RmulRmu_sc0041940.10631770.v1.475
Rrug02G0035980.1 rosa_rugosa Rrug02G0035980.1
Roff14280177640 rosmarinus_officinalis Roff14280177640
Roff14280177650 rosmarinus_officinalis Roff14280177650
RUchi02G0026490.1 rubus_chingii RUchi02G0026490.1
RUchi02G0029190.1 rubus_chingii RUchi02G0029190.1
RUchi03G0009450.1 rubus_chingii RUchi03G0009450.1
rubus_idaeus_g7624.t1 rubus_idaeus rubus_idaeus_g7624.t1
Rocc02G0027010.1 rubus_occidentalis Rocc02G0027010.1
Sspon.04G0010630-1P-mRNA-1:cds saccharum_spontaneum Sspon.04G0010630-1P-mRNA-1:cds
Sspon.04G0010630-3C-mRNA-1:cds saccharum_spontaneum Sspon.04G0010630-3C-mRNA-1:cds
Sspon.04G0010630-3P-mRNA-1:cds saccharum_spontaneum Sspon.04G0010630-3P-mRNA-1:cds
Sspon.04G0010630-4D-mRNA-1:cds saccharum_spontaneum Sspon.04G0010630-4D-mRNA-1:cds
Sspon.04G0032740-1C-mRNA-1:cds saccharum_spontaneum Sspon.04G0032740-1C-mRNA-1:cds
Sspon.06G0016180-2C-mRNA-1:cds saccharum_spontaneum Sspon.06G0016180-2C-mRNA-1:cds
Sspon.06G0030640-1P-mRNA-1.cds1 saccharum_spontaneum Sspon.06G0030640-1P-mRNA-1.cds1
Sspon.06G0030640-2D-mRNA-1:cds saccharum_spontaneum Sspon.06G0030640-2D-mRNA-1:cds
Sspon.06G0034490-1D-mRNA-1:cds saccharum_spontaneum Sspon.06G0034490-1D-mRNA-1:cds
Sspon.06G0034530-1D-mRNA-1:cds saccharum_spontaneum Sspon.06G0034530-1D-mRNA-1:cds
Sspp03G0033570.1 saccharum_spp_r570 Sspp03G0033570.1
Sspp04G0011630.1 saccharum_spp_r570 Sspp04G0011630.1
Sspp05G0011570.1 saccharum_spp_r570 Sspp05G0011570.1
Sspp07G0003030.1 saccharum_spp_r570 Sspp07G0003030.1
salix_arbutifolia_GWHPBDOB008975 salix_arbutifolia salix_arbutifolia_GWHPBDOB008975
salix_arbutifolia_GWHPBDOB009180 salix_arbutifolia salix_arbutifolia_GWHPBDOB009180