Amaranthus tricolor (amaranthus_tricolor)
Imported from atlas release summary for Amaranthus tricolor.
1090
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1090
Candidate Genes
C3'H/CYP98A
6.5%
C4H
6.22%
POD
5.53%
BAHD
5.17%
UGT
4.13%
CYP76
3.81%
7DLGT
3.77%
UFGT
3.77%
Other Families
61.09%
More Families (96)
T3O
102
3.67%
4CL
99
3.56%
IFS
94
3.38%
NMT
86
3.09%
F3H
71
2.55%
F3'H/CYP75B
59
2.12%
BR6OX2/CYP85A2
53
1.9%
DWF4/CYP90B1
53
1.9%
STR
49
1.76%
CODM/T6ODM
44
1.58%
CAD
41
1.47%
CYP71
40
1.44%
SMT1/SMT2/SMT3
37
1.33%
RAS
34
1.22%
TRI/TRII
33
1.19%
IFR
32
1.15%
CYP90D1
32
1.15%
CAS
29
1.04%
PYKS
28
1.01%
LAC
27
0.97%
HCT
27
0.97%
COMT
25
0.9%
H6H
24
0.86%
CSE
23
0.83%
TPS
23
0.83%
GES
22
0.79%
F3'5'H/CYP75A
22
0.79%
SGD
21
0.75%
SLS
21
0.75%
GS
20
0.72%
ANR
20
0.72%
BR6OX1/CYP85A1
20
0.72%
PMT
18
0.65%
7DLH
17
0.61%
T16H
16
0.57%
BBE
15
0.54%
IO
15
0.54%
G8O/G8H
15
0.54%
16OMT
15
0.54%
CYP51G1
15
0.54%
LAMT
14
0.5%
CCR
11
0.4%
TAT
11
0.4%
CYP719
9
0.32%
8HGO
9
0.32%
FNS
9
0.32%
CPD/CYP90A1
9
0.32%
FPPS
9
0.32%
TDC
8
0.29%
CCoAOMT
8
0.29%
CNMT
7
0.25%
CPR
7
0.25%
ROT3/CYP90C1
7
0.25%
GGPPS
7
0.25%
AACT
7
0.25%
NCS
6
0.22%
COR
6
0.22%
ISY
6
0.22%
ANS/LDOX
6
0.22%
PAL
6
0.22%
F5H/CYP84A
6
0.22%
HPPR
6
0.22%
MVK
6
0.22%
TYDC_DDC
5
0.18%
MPO
5
0.18%
DFR
5
0.18%
SQS/FDFT1
5
0.18%
CHS
4
0.14%
DET2
4
0.14%
HYD1
4
0.14%
MVD
4
0.14%
CHI
3
0.11%
SQE
3
0.11%
SMO1/SMO2
3
0.11%
DWF7
3
0.11%
MDS/IspF
3
0.11%
DXS
3
0.11%
MCT/IspD
3
0.11%
HDR/IspH
3
0.11%
XMT_MXMT_DXMT
2
0.07%
FK
2
0.07%
DWF1
2
0.07%
DXR
2
0.07%
IDI
2
0.07%
HMGS
2
0.07%
CYP80F1
1
0.04%
CYP80B1
1
0.04%
6OMT_4OMT_SOMT
1
0.04%
ADC
1
0.04%
FLS
1
0.04%
CPI1
1
0.04%
DWF5
1
0.04%
CMK/IspE
1
0.04%
PMK
1
0.04%
HMGR
1
0.04%
HDS/IspG
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 305 | 19 | BAHD (115) | View species results |
| Phenylpropanoid pathway | 262 | 11 | POD (144) | View species results |
| Alkaloid pathway | 227 | 16 | 7DLGT (48) | View species results |
| Flavonoid pathway | 142 | 10 | UFGT (97) | View species results |
| Rosmarinic acid pathway | 97 | 7 | C4H (41) | View species results |
| Steroid pathway | 57 | 11 | SMT1/SMT2/SMT3 (21) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1067 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 205 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| amaranthus_tricolor_g11577.t1 | Flavonoid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| amaranthus_tricolor_g11955.t1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| amaranthus_tricolor_g12216.t1 | Flavonoid | 4CL | medium | pass | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| amaranthus_tricolor_g12280.t1 | Flavonoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| amaranthus_tricolor_g13417.t1 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| amaranthus_tricolor_g13698.t1 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| amaranthus_tricolor_g14488.t1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| amaranthus_tricolor_g14496.t1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| amaranthus_tricolor_g15134.t1 | Flavonoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| amaranthus_tricolor_g15346.t1 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| amaranthus_tricolor_g18452.t1 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| amaranthus_tricolor_g18833.t1 | Flavonoid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| amaranthus_tricolor_g20233.t1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| amaranthus_tricolor_g20234.t1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| amaranthus_tricolor_g20249.t1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| amaranthus_tricolor_g21210.t1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| amaranthus_tricolor_g21302.t1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| amaranthus_tricolor_g21303.t1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| amaranthus_tricolor_g21343.t1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| amaranthus_tricolor_g22246.t1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| amaranthus_tricolor_g22248.t1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| amaranthus_tricolor_g22285.t1 | Flavonoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| amaranthus_tricolor_g22753.t1 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| amaranthus_tricolor_g23590.t1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| amaranthus_tricolor_g24127.t1 | Flavonoid | 4CL | low | borderline | 4CL__00001__sp_I3PB36_CNL_PETHY |
| amaranthus_tricolor_g25330.t1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| amaranthus_tricolor_g26091.t1 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| amaranthus_tricolor_g3009.t1 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| amaranthus_tricolor_g3730.t1 | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| amaranthus_tricolor_g50.t1 | Flavonoid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| amaranthus_tricolor_g532.t1 | Flavonoid | 4CL | low | borderline | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| amaranthus_tricolor_g8158.t1 | Flavonoid | 4CL | low | borderline | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| amaranthus_tricolor_g8386.t1 | Flavonoid | 4CL | low | borderline | 4CL__00007__sp_Q42524_4CL1_ARATH |
| amaranthus_tricolor_g11577.t1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| amaranthus_tricolor_g11955.t1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| amaranthus_tricolor_g12216.t1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| amaranthus_tricolor_g12280.t1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| amaranthus_tricolor_g13417.t1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| amaranthus_tricolor_g13698.t1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| amaranthus_tricolor_g14488.t1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| amaranthus_tricolor_g14496.t1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| amaranthus_tricolor_g15134.t1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| amaranthus_tricolor_g15346.t1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| amaranthus_tricolor_g18452.t1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| amaranthus_tricolor_g18833.t1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| amaranthus_tricolor_g20233.t1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| amaranthus_tricolor_g20234.t1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| amaranthus_tricolor_g20249.t1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| amaranthus_tricolor_g21210.t1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| amaranthus_tricolor_g21302.t1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |