PlantSME Plant secondary metabolism enzyme database

Amaranthus tricolor (amaranthus_tricolor)

Imported from atlas release summary for Amaranthus tricolor.

1090
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.98% Phenylpropanoid pathway 24.04% Alkaloid pathway 20.83% Flavonoid pathway 13.03% Rosmarinic acid pathway 8.9% Steroid pathway 5.23%
Family Distribution
C3'H/CYP98A 6.5% C4H 6.22% POD 5.53% BAHD 5.17% UGT 4.13% CYP76 3.81% 7DLGT 3.77% UFGT 3.77%
Other Families 61.09%
More Families (96)
T3O 102 3.67% 4CL 99 3.56% IFS 94 3.38% NMT 86 3.09% F3H 71 2.55% F3'H/CYP75B 59 2.12% BR6OX2/CYP85A2 53 1.9% DWF4/CYP90B1 53 1.9% STR 49 1.76% CODM/T6ODM 44 1.58% CAD 41 1.47% CYP71 40 1.44% SMT1/SMT2/SMT3 37 1.33% RAS 34 1.22% TRI/TRII 33 1.19% IFR 32 1.15% CYP90D1 32 1.15% CAS 29 1.04% PYKS 28 1.01% LAC 27 0.97% HCT 27 0.97% COMT 25 0.9% H6H 24 0.86% CSE 23 0.83% TPS 23 0.83% GES 22 0.79% F3'5'H/CYP75A 22 0.79% SGD 21 0.75% SLS 21 0.75% GS 20 0.72% ANR 20 0.72% BR6OX1/CYP85A1 20 0.72% PMT 18 0.65% 7DLH 17 0.61% T16H 16 0.57% BBE 15 0.54% IO 15 0.54% G8O/G8H 15 0.54% 16OMT 15 0.54% CYP51G1 15 0.54% LAMT 14 0.5% CCR 11 0.4% TAT 11 0.4% CYP719 9 0.32% 8HGO 9 0.32% FNS 9 0.32% CPD/CYP90A1 9 0.32% FPPS 9 0.32% TDC 8 0.29% CCoAOMT 8 0.29% CNMT 7 0.25% CPR 7 0.25% ROT3/CYP90C1 7 0.25% GGPPS 7 0.25% AACT 7 0.25% NCS 6 0.22% COR 6 0.22% ISY 6 0.22% ANS/LDOX 6 0.22% PAL 6 0.22% F5H/CYP84A 6 0.22% HPPR 6 0.22% MVK 6 0.22% TYDC_DDC 5 0.18% MPO 5 0.18% DFR 5 0.18% SQS/FDFT1 5 0.18% CHS 4 0.14% DET2 4 0.14% HYD1 4 0.14% MVD 4 0.14% CHI 3 0.11% SQE 3 0.11% SMO1/SMO2 3 0.11% DWF7 3 0.11% MDS/IspF 3 0.11% DXS 3 0.11% MCT/IspD 3 0.11% HDR/IspH 3 0.11% XMT_MXMT_DXMT 2 0.07% FK 2 0.07% DWF1 2 0.07% DXR 2 0.07% IDI 2 0.07% HMGS 2 0.07% CYP80F1 1 0.04% CYP80B1 1 0.04% 6OMT_4OMT_SOMT 1 0.04% ADC 1 0.04% FLS 1 0.04% CPI1 1 0.04% DWF5 1 0.04% CMK/IspE 1 0.04% PMK 1 0.04% HMGR 1 0.04% HDS/IspG 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 305 19 BAHD (115) View species results
Phenylpropanoid pathway 262 11 POD (144) View species results
Alkaloid pathway 227 16 7DLGT (48) View species results
Flavonoid pathway 142 10 UFGT (97) View species results
Rosmarinic acid pathway 97 7 C4H (41) View species results
Steroid pathway 57 11 SMT1/SMT2/SMT3 (21) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1067 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 205 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP719
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Gene Pathway Family Confidence Status Best Target
amaranthus_tricolor_g1123.t1 Alkaloid CYP719 medium borderline CYP719__00007__sp_L7T720_C719A_PODPE
amaranthus_tricolor_g1124.t1 Alkaloid CYP719 medium borderline CYP719__00007__sp_L7T720_C719A_PODPE
amaranthus_tricolor_g11254.t1 Alkaloid CYP719 medium borderline CYP719__00004__sp_B1NF20_C719E_ARGME
amaranthus_tricolor_g12803.t1 Alkaloid CYP719 medium borderline CYP719__00003__sp_B1NF19_C719D_ARGME
amaranthus_tricolor_g1658.t1 Alkaloid CYP719 medium borderline CYP719__00007__sp_L7T720_C719A_PODPE
amaranthus_tricolor_g21466.t1 Alkaloid CYP719 medium borderline CYP719__00004__sp_B1NF20_C719E_ARGME
amaranthus_tricolor_g5375.t1 Alkaloid CYP719 medium borderline CYP719__00003__sp_B1NF19_C719D_ARGME
amaranthus_tricolor_g7883.t1 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
amaranthus_tricolor_g9260.t1 Alkaloid CYP719 medium borderline CYP719__00007__sp_L7T720_C719A_PODPE