Amaranthus tricolor (amaranthus_tricolor)
Imported from atlas release summary for Amaranthus tricolor.
1090
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1090
Candidate Genes
C3'H/CYP98A
6.5%
C4H
6.22%
POD
5.53%
BAHD
5.17%
UGT
4.13%
CYP76
3.81%
7DLGT
3.77%
UFGT
3.77%
Other Families
61.09%
More Families (96)
T3O
102
3.67%
4CL
99
3.56%
IFS
94
3.38%
NMT
86
3.09%
F3H
71
2.55%
F3'H/CYP75B
59
2.12%
BR6OX2/CYP85A2
53
1.9%
DWF4/CYP90B1
53
1.9%
STR
49
1.76%
CODM/T6ODM
44
1.58%
CAD
41
1.47%
CYP71
40
1.44%
SMT1/SMT2/SMT3
37
1.33%
RAS
34
1.22%
TRI/TRII
33
1.19%
IFR
32
1.15%
CYP90D1
32
1.15%
CAS
29
1.04%
PYKS
28
1.01%
LAC
27
0.97%
HCT
27
0.97%
COMT
25
0.9%
H6H
24
0.86%
CSE
23
0.83%
TPS
23
0.83%
GES
22
0.79%
F3'5'H/CYP75A
22
0.79%
SGD
21
0.75%
SLS
21
0.75%
GS
20
0.72%
ANR
20
0.72%
BR6OX1/CYP85A1
20
0.72%
PMT
18
0.65%
7DLH
17
0.61%
T16H
16
0.57%
BBE
15
0.54%
IO
15
0.54%
G8O/G8H
15
0.54%
16OMT
15
0.54%
CYP51G1
15
0.54%
LAMT
14
0.5%
CCR
11
0.4%
TAT
11
0.4%
CYP719
9
0.32%
8HGO
9
0.32%
FNS
9
0.32%
CPD/CYP90A1
9
0.32%
FPPS
9
0.32%
TDC
8
0.29%
CCoAOMT
8
0.29%
CNMT
7
0.25%
CPR
7
0.25%
ROT3/CYP90C1
7
0.25%
GGPPS
7
0.25%
AACT
7
0.25%
NCS
6
0.22%
COR
6
0.22%
ISY
6
0.22%
ANS/LDOX
6
0.22%
PAL
6
0.22%
F5H/CYP84A
6
0.22%
HPPR
6
0.22%
MVK
6
0.22%
TYDC_DDC
5
0.18%
MPO
5
0.18%
DFR
5
0.18%
SQS/FDFT1
5
0.18%
CHS
4
0.14%
DET2
4
0.14%
HYD1
4
0.14%
MVD
4
0.14%
CHI
3
0.11%
SQE
3
0.11%
SMO1/SMO2
3
0.11%
DWF7
3
0.11%
MDS/IspF
3
0.11%
DXS
3
0.11%
MCT/IspD
3
0.11%
HDR/IspH
3
0.11%
XMT_MXMT_DXMT
2
0.07%
FK
2
0.07%
DWF1
2
0.07%
DXR
2
0.07%
IDI
2
0.07%
HMGS
2
0.07%
CYP80F1
1
0.04%
CYP80B1
1
0.04%
6OMT_4OMT_SOMT
1
0.04%
ADC
1
0.04%
FLS
1
0.04%
CPI1
1
0.04%
DWF5
1
0.04%
CMK/IspE
1
0.04%
PMK
1
0.04%
HMGR
1
0.04%
HDS/IspG
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 305 | 19 | BAHD (115) | View species results |
| Phenylpropanoid pathway | 262 | 11 | POD (144) | View species results |
| Alkaloid pathway | 227 | 16 | 7DLGT (48) | View species results |
| Flavonoid pathway | 142 | 10 | UFGT (97) | View species results |
| Rosmarinic acid pathway | 97 | 7 | C4H (41) | View species results |
| Steroid pathway | 57 | 11 | SMT1/SMT2/SMT3 (21) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1067 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 205 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| amaranthus_tricolor_g10659.t1 | Terpenoid | TPS | medium | pass | TPS__00059__sp_B9RXW0_TPS7_RICCO |
| amaranthus_tricolor_g10662.t1 | Terpenoid | TPS | medium | pass | TPS__00049__sp_A0A4Y5QZ62_T19BL_CANSA |
| amaranthus_tricolor_g10663.t1 | Terpenoid | TPS | medium | pass | TPS__00049__sp_A0A4Y5QZ62_T19BL_CANSA |
| amaranthus_tricolor_g10664.t1 | Terpenoid | TPS | medium | pass | TPS__00049__sp_A0A4Y5QZ62_T19BL_CANSA |
| amaranthus_tricolor_g10768.t1 | Terpenoid | TPS | low | borderline | TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC |
| amaranthus_tricolor_g14001.t1 | Terpenoid | TPS | medium | pass | TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA |
| amaranthus_tricolor_g16.t1 | Terpenoid | TPS | medium | pass | TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA |
| amaranthus_tricolor_g1759.t1 | Terpenoid | TPS | medium | pass | TPS__00076__sp_D0UZK2_TPS1_CITSI |
| amaranthus_tricolor_g1760.t1 | Terpenoid | TPS | medium | pass | TPS__00060__sp_B9S9Z3_TPS1_RICCO |
| amaranthus_tricolor_g19822.t1 | Terpenoid | TPS | low | borderline | TPS__00119__sp_G8H5N3_TPS16_SOLLC |
| amaranthus_tricolor_g19823.t1 | Terpenoid | TPS | medium | pass | TPS__00045__sp_A0A4Y5L9K3_T16CC_CANSA |
| amaranthus_tricolor_g20548.t1 | Terpenoid | TPS | medium | pass | TPS__00020__sp_A0A1V0QSF6_TS7FN_CANSA |
| amaranthus_tricolor_g20549.t1 | Terpenoid | TPS | medium | pass | TPS__00148__sp_O64961_TPS9_SOLLC |
| amaranthus_tricolor_g20550.t1 | Terpenoid | TPS | medium | pass | TPS__00020__sp_A0A1V0QSF6_TS7FN_CANSA |
| amaranthus_tricolor_g21383.t1 | Terpenoid | TPS | medium | pass | TPS__00062__sp_B9T536_TPS10_RICCO |
| amaranthus_tricolor_g22609.t1 | Terpenoid | TPS | medium | pass | TPS__00020__sp_A0A1V0QSF6_TS7FN_CANSA |
| amaranthus_tricolor_g25467.t1 | Terpenoid | TPS | medium | pass | TPS__00114__sp_G5CV45_TPS32_SOLLC |
| amaranthus_tricolor_g27259.t1 | Terpenoid | TPS | medium | pass | TPS__00046__sp_A0A4Y5QVX6_T20CT_CANSA |
| amaranthus_tricolor_g3015.t1 | Terpenoid | TPS | medium | pass | TPS__00007__sp_A0A142BX74_TPS2_XANST |
| amaranthus_tricolor_g5540.t1 | Terpenoid | TPS | medium | pass | TPS__00076__sp_D0UZK2_TPS1_CITSI |
| amaranthus_tricolor_g8205.t1 | Terpenoid | TPS | medium | pass | TPS__00062__sp_B9T536_TPS10_RICCO |
| amaranthus_tricolor_g8656.t1 | Terpenoid | TPS | medium | pass | TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC |
| amaranthus_tricolor_g9321.t1 | Terpenoid | TPS | medium | pass | TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF |