PlantSME Plant secondary metabolism enzyme database

Amaranthus tricolor (amaranthus_tricolor)

Imported from atlas release summary for Amaranthus tricolor.

1090
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.98% Phenylpropanoid pathway 24.04% Alkaloid pathway 20.83% Flavonoid pathway 13.03% Rosmarinic acid pathway 8.9% Steroid pathway 5.23%
Family Distribution
C3'H/CYP98A 6.5% C4H 6.22% POD 5.53% BAHD 5.17% UGT 4.13% CYP76 3.81% 7DLGT 3.77% UFGT 3.77%
Other Families 61.09%
More Families (96)
T3O 102 3.67% 4CL 99 3.56% IFS 94 3.38% NMT 86 3.09% F3H 71 2.55% F3'H/CYP75B 59 2.12% BR6OX2/CYP85A2 53 1.9% DWF4/CYP90B1 53 1.9% STR 49 1.76% CODM/T6ODM 44 1.58% CAD 41 1.47% CYP71 40 1.44% SMT1/SMT2/SMT3 37 1.33% RAS 34 1.22% TRI/TRII 33 1.19% IFR 32 1.15% CYP90D1 32 1.15% CAS 29 1.04% PYKS 28 1.01% LAC 27 0.97% HCT 27 0.97% COMT 25 0.9% H6H 24 0.86% CSE 23 0.83% TPS 23 0.83% GES 22 0.79% F3'5'H/CYP75A 22 0.79% SGD 21 0.75% SLS 21 0.75% GS 20 0.72% ANR 20 0.72% BR6OX1/CYP85A1 20 0.72% PMT 18 0.65% 7DLH 17 0.61% T16H 16 0.57% BBE 15 0.54% IO 15 0.54% G8O/G8H 15 0.54% 16OMT 15 0.54% CYP51G1 15 0.54% LAMT 14 0.5% CCR 11 0.4% TAT 11 0.4% CYP719 9 0.32% 8HGO 9 0.32% FNS 9 0.32% CPD/CYP90A1 9 0.32% FPPS 9 0.32% TDC 8 0.29% CCoAOMT 8 0.29% CNMT 7 0.25% CPR 7 0.25% ROT3/CYP90C1 7 0.25% GGPPS 7 0.25% AACT 7 0.25% NCS 6 0.22% COR 6 0.22% ISY 6 0.22% ANS/LDOX 6 0.22% PAL 6 0.22% F5H/CYP84A 6 0.22% HPPR 6 0.22% MVK 6 0.22% TYDC_DDC 5 0.18% MPO 5 0.18% DFR 5 0.18% SQS/FDFT1 5 0.18% CHS 4 0.14% DET2 4 0.14% HYD1 4 0.14% MVD 4 0.14% CHI 3 0.11% SQE 3 0.11% SMO1/SMO2 3 0.11% DWF7 3 0.11% MDS/IspF 3 0.11% DXS 3 0.11% MCT/IspD 3 0.11% HDR/IspH 3 0.11% XMT_MXMT_DXMT 2 0.07% FK 2 0.07% DWF1 2 0.07% DXR 2 0.07% IDI 2 0.07% HMGS 2 0.07% CYP80F1 1 0.04% CYP80B1 1 0.04% 6OMT_4OMT_SOMT 1 0.04% ADC 1 0.04% FLS 1 0.04% CPI1 1 0.04% DWF5 1 0.04% CMK/IspE 1 0.04% PMK 1 0.04% HMGR 1 0.04% HDS/IspG 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 305 19 BAHD (115) View species results
Phenylpropanoid pathway 262 11 POD (144) View species results
Alkaloid pathway 227 16 7DLGT (48) View species results
Flavonoid pathway 142 10 UFGT (97) View species results
Rosmarinic acid pathway 97 7 C4H (41) View species results
Steroid pathway 57 11 SMT1/SMT2/SMT3 (21) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1067 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 205 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
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Gene Pathway Family Confidence Status Best Target
amaranthus_tricolor_g12306.t1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
amaranthus_tricolor_g12446.t1 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
amaranthus_tricolor_g12448.t1 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
amaranthus_tricolor_g16360.t1 Phenylpropanoid CCR low borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
amaranthus_tricolor_g18761.t1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
amaranthus_tricolor_g21659.t1 Phenylpropanoid CCR low borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
amaranthus_tricolor_g26754.t1 Phenylpropanoid CCR low borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
amaranthus_tricolor_g26794.t1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
amaranthus_tricolor_g4724.t1 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
amaranthus_tricolor_g9270.t1 Phenylpropanoid CCR low borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
amaranthus_tricolor_g944.t1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY