Amaranthus tricolor (amaranthus_tricolor)
Imported from atlas release summary for Amaranthus tricolor.
1371
Candidate Protein Records
1090
Pathway-Level Records
2783
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
2783
Family-Level Calls
C3'H/CYP98A
6.5%
C4H
6.22%
POD
5.53%
BAHD
5.17%
UGT
4.13%
CYP76
3.81%
7DLGT
3.77%
UFGT
3.77%
Other Families
61.09%
More Families (96)
T3O
102
3.67%
4CL
99
3.56%
IFS
94
3.38%
NMT
86
3.09%
F3H
71
2.55%
F3'H/CYP75B
59
2.12%
BR6OX2/CYP85A2
53
1.9%
DWF4/CYP90B1
53
1.9%
STR
49
1.76%
CODM/T6ODM
44
1.58%
CAD
41
1.47%
CYP71
40
1.44%
SMT1/SMT2/SMT3
37
1.33%
RAS
34
1.22%
TRI/TRII
33
1.19%
IFR
32
1.15%
CYP90D1
32
1.15%
CAS
29
1.04%
PYKS
28
1.01%
LAC
27
0.97%
HCT
27
0.97%
COMT
25
0.9%
H6H
24
0.86%
CSE
23
0.83%
TPS
23
0.83%
GES
22
0.79%
F3'5'H/CYP75A
22
0.79%
SGD
21
0.75%
SLS
21
0.75%
GS
20
0.72%
ANR
20
0.72%
BR6OX1/CYP85A1
20
0.72%
PMT
18
0.65%
7DLH
17
0.61%
T16H
16
0.57%
BBE
15
0.54%
IO
15
0.54%
G8O/G8H
15
0.54%
16OMT
15
0.54%
CYP51G1
15
0.54%
LAMT
14
0.5%
CCR
11
0.4%
TAT
11
0.4%
CYP719
9
0.32%
8HGO
9
0.32%
FNS
9
0.32%
CPD/CYP90A1
9
0.32%
FPPS
9
0.32%
TDC
8
0.29%
CCoAOMT
8
0.29%
CNMT
7
0.25%
CPR
7
0.25%
ROT3/CYP90C1
7
0.25%
GGPPS
7
0.25%
AACT
7
0.25%
NCS
6
0.22%
COR
6
0.22%
ISY
6
0.22%
ANS/LDOX
6
0.22%
PAL
6
0.22%
F5H/CYP84A
6
0.22%
HPPR
6
0.22%
MVK
6
0.22%
TYDC_DDC
5
0.18%
MPO
5
0.18%
DFR
5
0.18%
SQS/FDFT1
5
0.18%
CHS
4
0.14%
DET2
4
0.14%
HYD1
4
0.14%
MVD
4
0.14%
CHI
3
0.11%
SQE
3
0.11%
SMO1/SMO2
3
0.11%
DWF7
3
0.11%
MDS/IspF
3
0.11%
DXS
3
0.11%
MCT/IspD
3
0.11%
HDR/IspH
3
0.11%
XMT_MXMT_DXMT
2
0.07%
FK
2
0.07%
DWF1
2
0.07%
DXR
2
0.07%
IDI
2
0.07%
HMGS
2
0.07%
CYP80F1
1
0.04%
CYP80B1
1
0.04%
6OMT_4OMT_SOMT
1
0.04%
ADC
1
0.04%
FLS
1
0.04%
CPI1
1
0.04%
DWF5
1
0.04%
CMK/IspE
1
0.04%
PMK
1
0.04%
HMGR
1
0.04%
HDS/IspG
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 305 | 19 | BAHD (115) | View species results |
| Phenylpropanoid pathway | 262 | 11 | POD (144) | View species results |
| Alkaloid pathway | 227 | 16 | 7DLGT (48) | View species results |
| Flavonoid pathway | 142 | 10 | UFGT (97) | View species results |
| Rosmarinic acid pathway | 97 | 7 | C4H (41) | View species results |
| Steroid pathway | 57 | 11 | SMT1/SMT2/SMT3 (21) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1067 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 205 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLH
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| amaranthus_tricolor_g11415.t1 | Alkaloid | 7DLH | medium | borderline |
| amaranthus_tricolor_g11417.t1 | Alkaloid | 7DLH | medium | borderline |
| amaranthus_tricolor_g13553.t1 | Alkaloid | 7DLH | medium | borderline |
| amaranthus_tricolor_g13556.t1 | Alkaloid | 7DLH | medium | borderline |
| amaranthus_tricolor_g13557.t1 | Alkaloid | 7DLH | medium | borderline |
| amaranthus_tricolor_g13558.t1 | Alkaloid | 7DLH | medium | borderline |
| amaranthus_tricolor_g13560.t1 | Alkaloid | 7DLH | medium | borderline |
| amaranthus_tricolor_g13631.t1 | Alkaloid | 7DLH | low | borderline |
| amaranthus_tricolor_g13944.t1 | Alkaloid | 7DLH | low | borderline |
| amaranthus_tricolor_g15042.t1 | Alkaloid | 7DLH | low | borderline |
| amaranthus_tricolor_g15126.t1 | Alkaloid | 7DLH | medium | borderline |
| amaranthus_tricolor_g22746.t1 | Alkaloid | 7DLH | medium | borderline |
| amaranthus_tricolor_g23159.t1 | Alkaloid | 7DLH | medium | borderline |
| amaranthus_tricolor_g26384.t1 | Alkaloid | 7DLH | medium | borderline |
| amaranthus_tricolor_g3624.t1 | Alkaloid | 7DLH | medium | borderline |
| amaranthus_tricolor_g4583.t1 | Alkaloid | 7DLH | medium | borderline |
| amaranthus_tricolor_g7685.t1 | Alkaloid | 7DLH | medium | borderline |