Amaranthus tricolor (amaranthus_tricolor)
Imported from atlas release summary for Amaranthus tricolor.
1090
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1090
Candidate Genes
C3'H/CYP98A
6.5%
C4H
6.22%
POD
5.53%
BAHD
5.17%
UGT
4.13%
CYP76
3.81%
7DLGT
3.77%
UFGT
3.77%
Other Families
61.09%
More Families (96)
T3O
102
3.67%
4CL
99
3.56%
IFS
94
3.38%
NMT
86
3.09%
F3H
71
2.55%
F3'H/CYP75B
59
2.12%
BR6OX2/CYP85A2
53
1.9%
DWF4/CYP90B1
53
1.9%
STR
49
1.76%
CODM/T6ODM
44
1.58%
CAD
41
1.47%
CYP71
40
1.44%
SMT1/SMT2/SMT3
37
1.33%
RAS
34
1.22%
TRI/TRII
33
1.19%
IFR
32
1.15%
CYP90D1
32
1.15%
CAS
29
1.04%
PYKS
28
1.01%
LAC
27
0.97%
HCT
27
0.97%
COMT
25
0.9%
H6H
24
0.86%
CSE
23
0.83%
TPS
23
0.83%
GES
22
0.79%
F3'5'H/CYP75A
22
0.79%
SGD
21
0.75%
SLS
21
0.75%
GS
20
0.72%
ANR
20
0.72%
BR6OX1/CYP85A1
20
0.72%
PMT
18
0.65%
7DLH
17
0.61%
T16H
16
0.57%
BBE
15
0.54%
IO
15
0.54%
G8O/G8H
15
0.54%
16OMT
15
0.54%
CYP51G1
15
0.54%
LAMT
14
0.5%
CCR
11
0.4%
TAT
11
0.4%
CYP719
9
0.32%
8HGO
9
0.32%
FNS
9
0.32%
CPD/CYP90A1
9
0.32%
FPPS
9
0.32%
TDC
8
0.29%
CCoAOMT
8
0.29%
CNMT
7
0.25%
CPR
7
0.25%
ROT3/CYP90C1
7
0.25%
GGPPS
7
0.25%
AACT
7
0.25%
NCS
6
0.22%
COR
6
0.22%
ISY
6
0.22%
ANS/LDOX
6
0.22%
PAL
6
0.22%
F5H/CYP84A
6
0.22%
HPPR
6
0.22%
MVK
6
0.22%
TYDC_DDC
5
0.18%
MPO
5
0.18%
DFR
5
0.18%
SQS/FDFT1
5
0.18%
CHS
4
0.14%
DET2
4
0.14%
HYD1
4
0.14%
MVD
4
0.14%
CHI
3
0.11%
SQE
3
0.11%
SMO1/SMO2
3
0.11%
DWF7
3
0.11%
MDS/IspF
3
0.11%
DXS
3
0.11%
MCT/IspD
3
0.11%
HDR/IspH
3
0.11%
XMT_MXMT_DXMT
2
0.07%
FK
2
0.07%
DWF1
2
0.07%
DXR
2
0.07%
IDI
2
0.07%
HMGS
2
0.07%
CYP80F1
1
0.04%
CYP80B1
1
0.04%
6OMT_4OMT_SOMT
1
0.04%
ADC
1
0.04%
FLS
1
0.04%
CPI1
1
0.04%
DWF5
1
0.04%
CMK/IspE
1
0.04%
PMK
1
0.04%
HMGR
1
0.04%
HDS/IspG
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 305 | 19 | BAHD (115) | View species results |
| Phenylpropanoid pathway | 262 | 11 | POD (144) | View species results |
| Alkaloid pathway | 227 | 16 | 7DLGT (48) | View species results |
| Flavonoid pathway | 142 | 10 | UFGT (97) | View species results |
| Rosmarinic acid pathway | 97 | 7 | C4H (41) | View species results |
| Steroid pathway | 57 | 11 | SMT1/SMT2/SMT3 (21) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1067 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 205 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| amaranthus_tricolor_g10575.t1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g11956.t1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| amaranthus_tricolor_g11957.t1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| amaranthus_tricolor_g12494.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g12552.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g15529.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g15632.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g15963.t1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| amaranthus_tricolor_g15964.t1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| amaranthus_tricolor_g16668.t1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g17720.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g18980.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g19298.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g1951.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g1952.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g19864.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g20115.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g20433.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g20728.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g20767.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g21021.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g24321.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g25067.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g26742.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g27459.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g3143.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g3572.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g3575.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g3597.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g5555.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g5986.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g6188.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g6191.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g6412.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g6669.t1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| amaranthus_tricolor_g6857.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g7283.t1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| amaranthus_tricolor_g745.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g7673.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g7721.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g8099.t1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g8116.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g8217.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g836.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g9272.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g9273.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g9274.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g9398.t1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| amaranthus_tricolor_g9466.t1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |