PlantSME Plant secondary metabolism enzyme database

Arabis alpina (arabis_alpina)

Imported from atlas release summary for Arabis alpina.

1406
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.3% Alkaloid pathway 22.9% Phenylpropanoid pathway 18.78% Flavonoid pathway 12.45% Rosmarinic acid pathway 8.04% Steroid pathway 7.54%
Family Distribution
BAHD 6.94% C3'H/CYP98A 5.94% C4H 5.91% CYP76 4.35% IFS 3.7% 4CL 3.7% POD 3.67% UGT 3.5%
Other Families 62.29%
More Families (94)
UFGT 118 3.47% 7DLGT 117 3.44% T3O 106 3.12% F3H 98 2.88% NMT 94 2.76% DWF4/CYP90B1 84 2.47% BR6OX2/CYP85A2 74 2.18% SGD 67 1.97% F3'H/CYP75B 67 1.97% SMT1/SMT2/SMT3 64 1.88% STR 61 1.79% CODM/T6ODM 58 1.7% H6H 48 1.41% CYP71 44 1.29% CAS 42 1.23% TRI/TRII 41 1.21% T16H 39 1.15% CSE 39 1.15% CAD 39 1.15% IFR 36 1.06% FNS 30 0.88% RAS 30 0.88% TPS 30 0.88% SLS 29 0.85% GES 28 0.82% G8O/G8H 27 0.79% PYKS 26 0.76% F5H/CYP84A 26 0.76% TAT 26 0.76% CPD/CYP90A1 23 0.68% BBE 22 0.65% GS 22 0.65% LAC 21 0.62% COMT 21 0.62% ANR 20 0.59% LAMT 19 0.56% HCT 19 0.56% CCR 18 0.53% IO 17 0.5% CYP90D1 17 0.5% 8HGO 15 0.44% GGPPS 15 0.44% 16OMT 14 0.41% 7DLH 14 0.41% F3'5'H/CYP75A 13 0.38% PAL 12 0.35% CPR 11 0.32% SMO1/SMO2 11 0.32% CYP51G1 11 0.32% BR6OX1/CYP85A1 11 0.32% CNMT 10 0.29% DFR 10 0.29% ANS/LDOX 10 0.29% PMT 9 0.26% FPPS 9 0.26% NCS 8 0.24% MPO 8 0.24% CYP719 7 0.21% COR 7 0.21% ROT3/CYP90C1 7 0.21% AACT 7 0.21% CCoAOMT 6 0.18% SQE 6 0.18% MVK 6 0.18% CHS 5 0.15% HPPR 5 0.15% SQS/FDFT1 5 0.15% MVD 5 0.15% TDC 4 0.12% CYP80B1 4 0.12% DWF7 4 0.12% CYP80F1 3 0.09% TYDC_DDC 3 0.09% CHI 3 0.09% DET2 3 0.09% MCT/IspD 3 0.09% IDI 3 0.09% DXS 3 0.09% ADC 2 0.06% ISY 2 0.06% HYD1 2 0.06% DWF1 2 0.06% PMK 2 0.06% HMGR 2 0.06% XMT_MXMT_DXMT 1 0.03% DWF5 1 0.03% FK 1 0.03% CPI1 1 0.03% MDS/IspF 1 0.03% CMK/IspE 1 0.03% HMGS 1 0.03% HDR/IspH 1 0.03% HDS/IspG 1 0.03% DXR 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 426 19 BAHD (197) View species results
Alkaloid pathway 322 18 SGD (62) View species results
Phenylpropanoid pathway 264 11 POD (121) View species results
Flavonoid pathway 175 9 UFGT (116) View species results
Rosmarinic acid pathway 113 7 C4H (48) View species results
Steroid pathway 106 13 SMT1/SMT2/SMT3 (44) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1300 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 285 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
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Gene Pathway Family Confidence Status Best Target
Aalp01G0021330 Phenylpropanoid CCR medium borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
Aalp01G0033140 Phenylpropanoid CCR medium pass CCR__00007__sp_Q9CA28_TKPR2_ARATH
Aalp02G0014550 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Aalp02G0026960 Phenylpropanoid CCR medium borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
Aalp02G0026970 Phenylpropanoid CCR medium borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
Aalp04G0027070 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Aalp04G0041260 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Aalp04G0043580 Phenylpropanoid CCR medium borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
Aalp05G0001480 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Aalp06G0008640 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Aalp06G0025720 Phenylpropanoid CCR medium pass CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Aalp07G0005640 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Aalp07G0014090 Phenylpropanoid CCR medium pass CCR__00009__sp_Q9SAH9_CCR2_ARATH
Aalp07G0024250 Phenylpropanoid CCR medium borderline CCR__00009__sp_Q9SAH9_CCR2_ARATH
Aalp08G0017050 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Aalp08G0022820 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Aalp08G0041380 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Aalp08G0057000 Phenylpropanoid CCR low borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH