PlantSME Plant secondary metabolism enzyme database

Arabis alpina (arabis_alpina)

Imported from atlas release summary for Arabis alpina.

1406
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 426 19 BAHD (197) View species results
Alkaloid pathway 322 18 SGD (62) View species results
Phenylpropanoid pathway 264 11 POD (121) View species results
Flavonoid pathway 175 9 UFGT (116) View species results
Rosmarinic acid pathway 113 7 C4H (48) View species results
Steroid pathway 106 13 SMT1/SMT2/SMT3 (44) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1300 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 285 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status Best Target
Aalp01G0017150 Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
Aalp02G0024600 Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU
Aalp03G0024820 Alkaloid G8O/G8H medium pass G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU
Aalp03G0024830 Alkaloid G8O/G8H medium pass G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU
Aalp03G0031910 Alkaloid G8O/G8H low borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
Aalp04G0005760 Alkaloid G8O/G8H medium pass G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
Aalp04G0005780 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
Aalp04G0008190 Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU
Aalp04G0010490 Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
Aalp04G0015080 Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU
Aalp04G0017660 Alkaloid G8O/G8H medium borderline G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU
Aalp04G0018260 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
Aalp04G0033380 Alkaloid G8O/G8H low borderline G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU
Aalp04G0039570 Alkaloid G8O/G8H low borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
Aalp05G0006600 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
Aalp06G0008880 Alkaloid G8O/G8H low borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
Aalp06G0016790 Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
Aalp06G0026140 Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
Aalp07G0003110 Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU
Aalp07G0013300 Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU
Aalp07G0021790 Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
Aalp08G0004750 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
Aalp08G0011990 Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
Aalp08G0040000 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
Aalp08G0056210 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
Aalp08G0057780 Alkaloid G8O/G8H medium borderline G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU
Aalpscaffold_3020006400 Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU