Arabis alpina (arabis_alpina)
Imported from atlas release summary for Arabis alpina.
1406
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1406
Candidate Genes
BAHD
6.94%
C3'H/CYP98A
5.94%
C4H
5.91%
CYP76
4.35%
IFS
3.7%
4CL
3.7%
POD
3.67%
UGT
3.5%
Other Families
62.29%
More Families (94)
UFGT
118
3.47%
7DLGT
117
3.44%
T3O
106
3.12%
F3H
98
2.88%
NMT
94
2.76%
DWF4/CYP90B1
84
2.47%
BR6OX2/CYP85A2
74
2.18%
SGD
67
1.97%
F3'H/CYP75B
67
1.97%
SMT1/SMT2/SMT3
64
1.88%
STR
61
1.79%
CODM/T6ODM
58
1.7%
H6H
48
1.41%
CYP71
44
1.29%
CAS
42
1.23%
TRI/TRII
41
1.21%
T16H
39
1.15%
CSE
39
1.15%
CAD
39
1.15%
IFR
36
1.06%
FNS
30
0.88%
RAS
30
0.88%
TPS
30
0.88%
SLS
29
0.85%
GES
28
0.82%
G8O/G8H
27
0.79%
PYKS
26
0.76%
F5H/CYP84A
26
0.76%
TAT
26
0.76%
CPD/CYP90A1
23
0.68%
BBE
22
0.65%
GS
22
0.65%
LAC
21
0.62%
COMT
21
0.62%
ANR
20
0.59%
LAMT
19
0.56%
HCT
19
0.56%
CCR
18
0.53%
IO
17
0.5%
CYP90D1
17
0.5%
8HGO
15
0.44%
GGPPS
15
0.44%
16OMT
14
0.41%
7DLH
14
0.41%
F3'5'H/CYP75A
13
0.38%
PAL
12
0.35%
CPR
11
0.32%
SMO1/SMO2
11
0.32%
CYP51G1
11
0.32%
BR6OX1/CYP85A1
11
0.32%
CNMT
10
0.29%
DFR
10
0.29%
ANS/LDOX
10
0.29%
PMT
9
0.26%
FPPS
9
0.26%
NCS
8
0.24%
MPO
8
0.24%
CYP719
7
0.21%
COR
7
0.21%
ROT3/CYP90C1
7
0.21%
AACT
7
0.21%
CCoAOMT
6
0.18%
SQE
6
0.18%
MVK
6
0.18%
CHS
5
0.15%
HPPR
5
0.15%
SQS/FDFT1
5
0.15%
MVD
5
0.15%
TDC
4
0.12%
CYP80B1
4
0.12%
DWF7
4
0.12%
CYP80F1
3
0.09%
TYDC_DDC
3
0.09%
CHI
3
0.09%
DET2
3
0.09%
MCT/IspD
3
0.09%
IDI
3
0.09%
DXS
3
0.09%
ADC
2
0.06%
ISY
2
0.06%
HYD1
2
0.06%
DWF1
2
0.06%
PMK
2
0.06%
HMGR
2
0.06%
XMT_MXMT_DXMT
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
MDS/IspF
1
0.03%
CMK/IspE
1
0.03%
HMGS
1
0.03%
HDR/IspH
1
0.03%
HDS/IspG
1
0.03%
DXR
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 426 | 19 | BAHD (197) | View species results |
| Alkaloid pathway | 322 | 18 | SGD (62) | View species results |
| Phenylpropanoid pathway | 264 | 11 | POD (121) | View species results |
| Flavonoid pathway | 175 | 9 | UFGT (116) | View species results |
| Rosmarinic acid pathway | 113 | 7 | C4H (48) | View species results |
| Steroid pathway | 106 | 13 | SMT1/SMT2/SMT3 (44) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1300 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 285 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HCT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Aalp01G0002990 | Phenylpropanoid | HCT | medium | pass | HCT__00002__sp_Q9FI78_HST_ARATH |
| Aalp01G0032590 | Phenylpropanoid | HCT | low | borderline | HCT__00002__sp_Q9FI78_HST_ARATH |
| Aalp01G0032600 | Phenylpropanoid | HCT | low | borderline | HCT__00002__sp_Q9FI78_HST_ARATH |
| Aalp03G0005310 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| Aalp03G0037810 | Phenylpropanoid | HCT | medium | pass | HCT__00002__sp_Q9FI78_HST_ARATH |
| Aalp04G0010550 | Phenylpropanoid | HCT | low | borderline | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| Aalp04G0036630 | Phenylpropanoid | HCT | low | borderline | HCT__00002__sp_Q9FI78_HST_ARATH |
| Aalp04G0037040 | Phenylpropanoid | HCT | low | borderline | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| Aalp05G0003710 | Phenylpropanoid | HCT | low | borderline | HCT__00002__sp_Q9FI78_HST_ARATH |
| Aalp05G0013370 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| Aalp06G0033470 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| Aalp07G0010240 | Phenylpropanoid | HCT | low | borderline | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| Aalp08G0001480 | Phenylpropanoid | HCT | low | borderline | HCT__00002__sp_Q9FI78_HST_ARATH |
| Aalp08G0007860 | Phenylpropanoid | HCT | low | borderline | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| Aalp08G0008940 | Phenylpropanoid | HCT | low | borderline | HCT__00002__sp_Q9FI78_HST_ARATH |
| Aalp08G0008970 | Phenylpropanoid | HCT | low | borderline | HCT__00002__sp_Q9FI78_HST_ARATH |
| Aalp08G0040700 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| Aalp08G0040710 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |
| Aalpscaffold_2170004900 | Phenylpropanoid | HCT | medium | pass | HCT__00001__sp_Q8GSM7_HST_TOBAC |