PlantSME Plant secondary metabolism enzyme database

Arabis alpina (arabis_alpina)

Imported from atlas release summary for Arabis alpina.

1406
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.3% Alkaloid pathway 22.9% Phenylpropanoid pathway 18.78% Flavonoid pathway 12.45% Rosmarinic acid pathway 8.04% Steroid pathway 7.54%
Family Distribution
BAHD 6.94% C3'H/CYP98A 5.94% C4H 5.91% CYP76 4.35% IFS 3.7% 4CL 3.7% POD 3.67% UGT 3.5%
Other Families 62.29%
More Families (94)
UFGT 118 3.47% 7DLGT 117 3.44% T3O 106 3.12% F3H 98 2.88% NMT 94 2.76% DWF4/CYP90B1 84 2.47% BR6OX2/CYP85A2 74 2.18% SGD 67 1.97% F3'H/CYP75B 67 1.97% SMT1/SMT2/SMT3 64 1.88% STR 61 1.79% CODM/T6ODM 58 1.7% H6H 48 1.41% CYP71 44 1.29% CAS 42 1.23% TRI/TRII 41 1.21% T16H 39 1.15% CSE 39 1.15% CAD 39 1.15% IFR 36 1.06% FNS 30 0.88% RAS 30 0.88% TPS 30 0.88% SLS 29 0.85% GES 28 0.82% G8O/G8H 27 0.79% PYKS 26 0.76% F5H/CYP84A 26 0.76% TAT 26 0.76% CPD/CYP90A1 23 0.68% BBE 22 0.65% GS 22 0.65% LAC 21 0.62% COMT 21 0.62% ANR 20 0.59% LAMT 19 0.56% HCT 19 0.56% CCR 18 0.53% IO 17 0.5% CYP90D1 17 0.5% 8HGO 15 0.44% GGPPS 15 0.44% 16OMT 14 0.41% 7DLH 14 0.41% F3'5'H/CYP75A 13 0.38% PAL 12 0.35% CPR 11 0.32% SMO1/SMO2 11 0.32% CYP51G1 11 0.32% BR6OX1/CYP85A1 11 0.32% CNMT 10 0.29% DFR 10 0.29% ANS/LDOX 10 0.29% PMT 9 0.26% FPPS 9 0.26% NCS 8 0.24% MPO 8 0.24% CYP719 7 0.21% COR 7 0.21% ROT3/CYP90C1 7 0.21% AACT 7 0.21% CCoAOMT 6 0.18% SQE 6 0.18% MVK 6 0.18% CHS 5 0.15% HPPR 5 0.15% SQS/FDFT1 5 0.15% MVD 5 0.15% TDC 4 0.12% CYP80B1 4 0.12% DWF7 4 0.12% CYP80F1 3 0.09% TYDC_DDC 3 0.09% CHI 3 0.09% DET2 3 0.09% MCT/IspD 3 0.09% IDI 3 0.09% DXS 3 0.09% ADC 2 0.06% ISY 2 0.06% HYD1 2 0.06% DWF1 2 0.06% PMK 2 0.06% HMGR 2 0.06% XMT_MXMT_DXMT 1 0.03% DWF5 1 0.03% FK 1 0.03% CPI1 1 0.03% MDS/IspF 1 0.03% CMK/IspE 1 0.03% HMGS 1 0.03% HDR/IspH 1 0.03% HDS/IspG 1 0.03% DXR 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 426 19 BAHD (197) View species results
Alkaloid pathway 322 18 SGD (62) View species results
Phenylpropanoid pathway 264 11 POD (121) View species results
Flavonoid pathway 175 9 UFGT (116) View species results
Rosmarinic acid pathway 113 7 C4H (48) View species results
Steroid pathway 106 13 SMT1/SMT2/SMT3 (44) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1300 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 285 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
Reset
Gene Pathway Family Confidence Status
Aalp07G0011110 Flavonoid IFS medium borderline
Aalp07G0011120 Flavonoid IFS medium borderline
Aalp07G0012240 Flavonoid IFS medium borderline
Aalp07G0019330 Flavonoid IFS low borderline
Aalp07G0021790 Flavonoid IFS medium borderline
Aalp07G0031850 Flavonoid IFS low borderline
Aalp07G0032830 Flavonoid IFS medium borderline
Aalp07G0038700 Flavonoid IFS low borderline
Aalp08G0005410 Flavonoid IFS low borderline
Aalp08G0006040 Flavonoid IFS low borderline
Aalp08G0009390 Flavonoid IFS low borderline
Aalp08G0040000 Flavonoid IFS medium borderline
Aalp08G0040040 Flavonoid IFS medium borderline
Aalp08G0041900 Flavonoid IFS low borderline
Aalp08G0048730 Flavonoid IFS medium borderline
Aalp08G0048750 Flavonoid IFS medium borderline
Aalp08G0048760 Flavonoid IFS medium borderline
Aalp08G0050940 Flavonoid IFS low borderline
Aalp08G0054270 Flavonoid IFS low borderline
Aalp08G0056210 Flavonoid IFS medium borderline
Aalp08G0057770 Flavonoid IFS medium borderline
Aalp08G0057790 Flavonoid IFS medium borderline
Aalp08G0057810 Flavonoid IFS medium borderline
Aalpscaffold_1720003200 Flavonoid IFS low borderline
Aalpscaffold_2550005510 Flavonoid IFS low borderline
Aalpscaffold_930012300 Flavonoid IFS low borderline