PlantSME Plant secondary metabolism enzyme database

Arabis alpina (arabis_alpina)

Imported from atlas release summary for Arabis alpina.

1406
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 426 19 BAHD (197) View species results
Alkaloid pathway 322 18 SGD (62) View species results
Phenylpropanoid pathway 264 11 POD (121) View species results
Flavonoid pathway 175 9 UFGT (116) View species results
Rosmarinic acid pathway 113 7 C4H (48) View species results
Steroid pathway 106 13 SMT1/SMT2/SMT3 (44) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1300 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 285 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status
Aalp01G0027020 Phenylpropanoid 4CL medium pass
Aalp01G0027030 Phenylpropanoid 4CL medium pass
Aalp01G0027040 Phenylpropanoid 4CL medium pass
Aalp01G0027050 Phenylpropanoid 4CL medium pass
Aalp01G0027060 Phenylpropanoid 4CL medium pass
Aalp01G0027070 Phenylpropanoid 4CL medium pass
Aalp01G0027080 Phenylpropanoid 4CL medium pass
Aalp01G0027130 Phenylpropanoid 4CL medium pass
Aalp01G0028070 Phenylpropanoid 4CL medium pass
Aalp01G0038600 Phenylpropanoid 4CL low borderline
Aalp02G0000420 Phenylpropanoid 4CL low borderline
Aalp02G0002500 Phenylpropanoid 4CL medium pass
Aalp02G0010450 Phenylpropanoid 4CL medium pass
Aalp02G0010490 Phenylpropanoid 4CL medium pass
Aalp02G0010500 Phenylpropanoid 4CL medium pass
Aalp02G0017310 Phenylpropanoid 4CL medium pass
Aalp02G0026340 Phenylpropanoid 4CL medium pass
Aalp02G0026700 Phenylpropanoid 4CL medium pass
Aalp02G0027700 Phenylpropanoid 4CL medium pass
Aalp02G0028100 Phenylpropanoid 4CL low borderline
Aalp03G0006210 Phenylpropanoid 4CL low borderline
Aalp03G0019630 Phenylpropanoid 4CL medium pass
Aalp03G0024270 Phenylpropanoid 4CL low borderline
Aalp03G0026760 Phenylpropanoid 4CL low borderline
Aalp03G0030510 Phenylpropanoid 4CL medium pass
Aalp03G0030520 Phenylpropanoid 4CL medium pass
Aalp03G0036040 Phenylpropanoid 4CL medium pass
Aalp04G0005570 Phenylpropanoid 4CL medium pass
Aalp04G0008020 Phenylpropanoid 4CL low borderline
Aalp04G0008040 Phenylpropanoid 4CL low borderline
Aalp04G0014460 Phenylpropanoid 4CL low borderline
Aalp04G0018520 Phenylpropanoid 4CL low borderline
Aalp04G0032360 Phenylpropanoid 4CL low borderline
Aalp04G0045630 Phenylpropanoid 4CL low borderline
Aalp05G0013680 Phenylpropanoid 4CL medium pass
Aalp06G0011870 Phenylpropanoid 4CL medium pass
Aalp06G0024130 Phenylpropanoid 4CL low borderline
Aalp07G0030360 Phenylpropanoid 4CL low borderline
Aalp07G0039020 Phenylpropanoid 4CL medium pass
Aalp08G0019370 Phenylpropanoid 4CL medium pass
Aalp08G0026350 Phenylpropanoid 4CL low borderline
Aalp08G0054190 Phenylpropanoid 4CL medium pass
Aalp01G0000920 Phenylpropanoid C3'H/CYP98A low borderline
Aalp01G0001430 Phenylpropanoid C3'H/CYP98A medium pass
Aalp01G0001520 Phenylpropanoid C3'H/CYP98A medium borderline
Aalp01G0005400 Phenylpropanoid C3'H/CYP98A low borderline
Aalp01G0010190 Phenylpropanoid C3'H/CYP98A low borderline
Aalp01G0014530 Phenylpropanoid C3'H/CYP98A low borderline
Aalp01G0015860 Phenylpropanoid C3'H/CYP98A low borderline
Aalp01G0016600 Phenylpropanoid C3'H/CYP98A low borderline