Arabis alpina (arabis_alpina)
Imported from atlas release summary for Arabis alpina.
1692
Candidate Protein Records
1406
Pathway-Level Records
3402
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3402
Family-Level Calls
BAHD
6.94%
C3'H/CYP98A
5.94%
C4H
5.91%
CYP76
4.35%
IFS
3.7%
4CL
3.7%
POD
3.67%
UGT
3.5%
Other Families
62.29%
More Families (94)
UFGT
118
3.47%
7DLGT
117
3.44%
T3O
106
3.12%
F3H
98
2.88%
NMT
94
2.76%
DWF4/CYP90B1
84
2.47%
BR6OX2/CYP85A2
74
2.18%
SGD
67
1.97%
F3'H/CYP75B
67
1.97%
SMT1/SMT2/SMT3
64
1.88%
STR
61
1.79%
CODM/T6ODM
58
1.7%
H6H
48
1.41%
CYP71
44
1.29%
CAS
42
1.23%
TRI/TRII
41
1.21%
T16H
39
1.15%
CSE
39
1.15%
CAD
39
1.15%
IFR
36
1.06%
FNS
30
0.88%
RAS
30
0.88%
TPS
30
0.88%
SLS
29
0.85%
GES
28
0.82%
G8O/G8H
27
0.79%
PYKS
26
0.76%
F5H/CYP84A
26
0.76%
TAT
26
0.76%
CPD/CYP90A1
23
0.68%
BBE
22
0.65%
GS
22
0.65%
LAC
21
0.62%
COMT
21
0.62%
ANR
20
0.59%
LAMT
19
0.56%
HCT
19
0.56%
CCR
18
0.53%
IO
17
0.5%
CYP90D1
17
0.5%
8HGO
15
0.44%
GGPPS
15
0.44%
16OMT
14
0.41%
7DLH
14
0.41%
F3'5'H/CYP75A
13
0.38%
PAL
12
0.35%
CPR
11
0.32%
SMO1/SMO2
11
0.32%
CYP51G1
11
0.32%
BR6OX1/CYP85A1
11
0.32%
CNMT
10
0.29%
DFR
10
0.29%
ANS/LDOX
10
0.29%
PMT
9
0.26%
FPPS
9
0.26%
NCS
8
0.24%
MPO
8
0.24%
CYP719
7
0.21%
COR
7
0.21%
ROT3/CYP90C1
7
0.21%
AACT
7
0.21%
CCoAOMT
6
0.18%
SQE
6
0.18%
MVK
6
0.18%
CHS
5
0.15%
HPPR
5
0.15%
SQS/FDFT1
5
0.15%
MVD
5
0.15%
TDC
4
0.12%
CYP80B1
4
0.12%
DWF7
4
0.12%
CYP80F1
3
0.09%
TYDC_DDC
3
0.09%
CHI
3
0.09%
DET2
3
0.09%
MCT/IspD
3
0.09%
IDI
3
0.09%
DXS
3
0.09%
ADC
2
0.06%
ISY
2
0.06%
HYD1
2
0.06%
DWF1
2
0.06%
PMK
2
0.06%
HMGR
2
0.06%
XMT_MXMT_DXMT
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
MDS/IspF
1
0.03%
CMK/IspE
1
0.03%
HMGS
1
0.03%
HDR/IspH
1
0.03%
HDS/IspG
1
0.03%
DXR
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 426 | 19 | BAHD (197) | View species results |
| Alkaloid pathway | 322 | 18 | SGD (62) | View species results |
| Phenylpropanoid pathway | 264 | 11 | POD (121) | View species results |
| Flavonoid pathway | 175 | 9 | UFGT (116) | View species results |
| Rosmarinic acid pathway | 113 | 7 | C4H (48) | View species results |
| Steroid pathway | 106 | 13 | SMT1/SMT2/SMT3 (44) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1300 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 285 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Aalp07G0010240 | Alkaloid | PMT | low | borderline |
| Aalp08G0026590 | Alkaloid | PMT | medium | borderline |
| Aalp08G0034410 | Alkaloid | PMT | medium | borderline |
| Aalp08G0047720 | Alkaloid | PMT | medium | pass |
| Aalpscaffold_2170004900 | Alkaloid | PMT | low | borderline |
| Aalp01G0000230 | Alkaloid | PYKS | high | pass |
| Aalp01G0001370 | Alkaloid | PYKS | low | borderline |
| Aalp01G0003850 | Alkaloid | PYKS | low | borderline |
| Aalp01G0009000 | Alkaloid | PYKS | low | borderline |
| Aalp01G0025790 | Alkaloid | PYKS | low | borderline |
| Aalp01G0033130 | Alkaloid | PYKS | low | borderline |
| Aalp02G0003050 | Alkaloid | PYKS | low | borderline |
| Aalp02G0014540 | Alkaloid | PYKS | low | borderline |
| Aalp02G0019580 | Alkaloid | PYKS | low | borderline |
| Aalp03G0000070 | Alkaloid | PYKS | high | pass |
| Aalp03G0033350 | Alkaloid | PYKS | low | borderline |
| Aalp03G0034320 | Alkaloid | PYKS | low | borderline |
| Aalp03G0034330 | Alkaloid | PYKS | low | borderline |
| Aalp04G0021820 | Alkaloid | PYKS | low | borderline |
| Aalp04G0045060 | Alkaloid | PYKS | low | borderline |
| Aalp05G0018530 | Alkaloid | PYKS | low | borderline |
| Aalp06G0000070 | Alkaloid | PYKS | high | pass |
| Aalp06G0004760 | Alkaloid | PYKS | low | borderline |
| Aalp06G0028460 | Alkaloid | PYKS | low | borderline |
| Aalp07G0006570 | Alkaloid | PYKS | high | pass |
| Aalp07G0007420 | Alkaloid | PYKS | low | borderline |
| Aalp08G0004660 | Alkaloid | PYKS | low | borderline |
| Aalp08G0005150 | Alkaloid | PYKS | low | borderline |
| Aalp08G0015930 | Alkaloid | PYKS | high | pass |
| Aalp08G0029090 | Alkaloid | PYKS | low | borderline |
| Aalp08G0032650 | Alkaloid | PYKS | low | borderline |
| Aalp01G0002250 | Alkaloid | SGD | medium | pass |
| Aalp01G0035000 | Alkaloid | SGD | medium | pass |
| Aalp02G0001850 | Alkaloid | SGD | medium | pass |
| Aalp02G0004320 | Alkaloid | SGD | medium | pass |
| Aalp02G0004380 | Alkaloid | SGD | medium | pass |
| Aalp02G0004410 | Alkaloid | SGD | medium | pass |
| Aalp02G0004420 | Alkaloid | SGD | medium | pass |
| Aalp02G0004430 | Alkaloid | SGD | medium | pass |
| Aalp02G0026320 | Alkaloid | SGD | medium | pass |
| Aalp03G0003240 | Alkaloid | SGD | medium | pass |
| Aalp03G0007360 | Alkaloid | SGD | low | borderline |
| Aalp03G0009730 | Alkaloid | SGD | medium | pass |
| Aalp03G0009740 | Alkaloid | SGD | medium | pass |
| Aalp03G0009750 | Alkaloid | SGD | medium | pass |
| Aalp03G0009760 | Alkaloid | SGD | low | borderline |
| Aalp03G0009770 | Alkaloid | SGD | medium | pass |
| Aalp03G0014720 | Alkaloid | SGD | low | borderline |
| Aalp03G0020960 | Alkaloid | SGD | medium | pass |
| Aalp03G0020970 | Alkaloid | SGD | medium | pass |