PlantSME Plant secondary metabolism enzyme database

Arabis alpina (arabis_alpina)

Imported from atlas release summary for Arabis alpina.

1406
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 426 19 BAHD (197) View species results
Alkaloid pathway 322 18 SGD (62) View species results
Phenylpropanoid pathway 264 11 POD (121) View species results
Flavonoid pathway 175 9 UFGT (116) View species results
Rosmarinic acid pathway 113 7 C4H (48) View species results
Steroid pathway 106 13 SMT1/SMT2/SMT3 (44) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1300 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 285 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Aalp03G0037270 Alkaloid 7DLGT medium pass
Aalp03G0038550 Alkaloid 7DLGT medium pass
Aalp04G0006070 Alkaloid 7DLGT low borderline
Aalp04G0006100 Alkaloid 7DLGT low borderline
Aalp04G0006660 Alkaloid 7DLGT medium pass
Aalp04G0006680 Alkaloid 7DLGT low borderline
Aalp04G0006700 Alkaloid 7DLGT low borderline
Aalp04G0008780 Alkaloid 7DLGT low borderline
Aalp04G0011580 Alkaloid 7DLGT medium pass
Aalp04G0011690 Alkaloid 7DLGT low borderline
Aalp04G0011720 Alkaloid 7DLGT low borderline
Aalp04G0011730 Alkaloid 7DLGT low borderline
Aalp04G0011760 Alkaloid 7DLGT low borderline
Aalp04G0011930 Alkaloid 7DLGT low borderline
Aalp04G0011940 Alkaloid 7DLGT medium pass
Aalp04G0014410 Alkaloid 7DLGT low borderline
Aalp04G0021990 Alkaloid 7DLGT low borderline
Aalp04G0023610 Alkaloid 7DLGT low borderline
Aalp04G0023640 Alkaloid 7DLGT low borderline
Aalp04G0023650 Alkaloid 7DLGT medium pass
Aalp04G0024260 Alkaloid 7DLGT low borderline
Aalp04G0027570 Alkaloid 7DLGT low borderline
Aalp04G0031540 Alkaloid 7DLGT low borderline
Aalp04G0031560 Alkaloid 7DLGT low borderline
Aalp04G0031570 Alkaloid 7DLGT low borderline
Aalp04G0031580 Alkaloid 7DLGT medium pass
Aalp04G0031590 Alkaloid 7DLGT medium pass
Aalp04G0032040 Alkaloid 7DLGT low borderline
Aalp04G0037350 Alkaloid 7DLGT low borderline
Aalp04G0041910 Alkaloid 7DLGT low borderline
Aalp04G0041920 Alkaloid 7DLGT low borderline
Aalp04G0041930 Alkaloid 7DLGT low borderline
Aalp05G0009020 Alkaloid 7DLGT medium pass
Aalp05G0009030 Alkaloid 7DLGT high pass
Aalp05G0009040 Alkaloid 7DLGT medium pass
Aalp05G0009050 Alkaloid 7DLGT high pass
Aalp05G0009090 Alkaloid 7DLGT high pass
Aalp05G0009100 Alkaloid 7DLGT high pass
Aalp05G0016180 Alkaloid 7DLGT low borderline
Aalp05G0020040 Alkaloid 7DLGT low borderline
Aalp05G0020060 Alkaloid 7DLGT medium pass
Aalp05G0022860 Alkaloid 7DLGT low borderline
Aalp05G0022870 Alkaloid 7DLGT medium pass
Aalp05G0024270 Alkaloid 7DLGT medium pass
Aalp05G0024280 Alkaloid 7DLGT low borderline
Aalp05G0024300 Alkaloid 7DLGT high pass
Aalp06G0001000 Alkaloid 7DLGT medium pass
Aalp06G0007210 Alkaloid 7DLGT low borderline
Aalp06G0007250 Alkaloid 7DLGT low borderline
Aalp06G0019220 Alkaloid 7DLGT low borderline