PlantSME Plant secondary metabolism enzyme database

Arabis alpina (arabis_alpina)

Imported from atlas release summary for Arabis alpina.

1692
Candidate Protein Records
1406
Pathway-Level Records
3402
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 30.3% Alkaloid pathway 22.9% Phenylpropanoid pathway 18.78% Flavonoid pathway 12.45% Rosmarinic acid pathway 8.04% Steroid pathway 7.54%
Family Distribution
BAHD 6.94% C3'H/CYP98A 5.94% C4H 5.91% CYP76 4.35% IFS 3.7% 4CL 3.7% POD 3.67% UGT 3.5%
Other Families 62.29%
More Families (94)
UFGT 118 3.47% 7DLGT 117 3.44% T3O 106 3.12% F3H 98 2.88% NMT 94 2.76% DWF4/CYP90B1 84 2.47% BR6OX2/CYP85A2 74 2.18% SGD 67 1.97% F3'H/CYP75B 67 1.97% SMT1/SMT2/SMT3 64 1.88% STR 61 1.79% CODM/T6ODM 58 1.7% H6H 48 1.41% CYP71 44 1.29% CAS 42 1.23% TRI/TRII 41 1.21% T16H 39 1.15% CSE 39 1.15% CAD 39 1.15% IFR 36 1.06% FNS 30 0.88% RAS 30 0.88% TPS 30 0.88% SLS 29 0.85% GES 28 0.82% G8O/G8H 27 0.79% PYKS 26 0.76% F5H/CYP84A 26 0.76% TAT 26 0.76% CPD/CYP90A1 23 0.68% BBE 22 0.65% GS 22 0.65% LAC 21 0.62% COMT 21 0.62% ANR 20 0.59% LAMT 19 0.56% HCT 19 0.56% CCR 18 0.53% IO 17 0.5% CYP90D1 17 0.5% 8HGO 15 0.44% GGPPS 15 0.44% 16OMT 14 0.41% 7DLH 14 0.41% F3'5'H/CYP75A 13 0.38% PAL 12 0.35% CPR 11 0.32% SMO1/SMO2 11 0.32% CYP51G1 11 0.32% BR6OX1/CYP85A1 11 0.32% CNMT 10 0.29% DFR 10 0.29% ANS/LDOX 10 0.29% PMT 9 0.26% FPPS 9 0.26% NCS 8 0.24% MPO 8 0.24% CYP719 7 0.21% COR 7 0.21% ROT3/CYP90C1 7 0.21% AACT 7 0.21% CCoAOMT 6 0.18% SQE 6 0.18% MVK 6 0.18% CHS 5 0.15% HPPR 5 0.15% SQS/FDFT1 5 0.15% MVD 5 0.15% TDC 4 0.12% CYP80B1 4 0.12% DWF7 4 0.12% CYP80F1 3 0.09% TYDC_DDC 3 0.09% CHI 3 0.09% DET2 3 0.09% MCT/IspD 3 0.09% IDI 3 0.09% DXS 3 0.09% ADC 2 0.06% ISY 2 0.06% HYD1 2 0.06% DWF1 2 0.06% PMK 2 0.06% HMGR 2 0.06% XMT_MXMT_DXMT 1 0.03% DWF5 1 0.03% FK 1 0.03% CPI1 1 0.03% MDS/IspF 1 0.03% CMK/IspE 1 0.03% HMGS 1 0.03% HDR/IspH 1 0.03% HDS/IspG 1 0.03% DXR 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 426 19 BAHD (197) View species results
Alkaloid pathway 322 18 SGD (62) View species results
Phenylpropanoid pathway 264 11 POD (121) View species results
Flavonoid pathway 175 9 UFGT (116) View species results
Rosmarinic acid pathway 113 7 C4H (48) View species results
Steroid pathway 106 13 SMT1/SMT2/SMT3 (44) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1300 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 285 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status Best Target
Aalp08G0006190 Flavonoid UFGT medium pass UFGT__00003__sp_Q66PF5_UFOG1_FRAAN
Aalp08G0006200 Flavonoid UFGT medium pass UFGT__00002__sp_Q5UL10_UFOG2_FRAAN
Aalp08G0006210 Flavonoid UFGT high pass UFGT__00004__sp_Q96493_UFOG_GENTR
Aalp08G0006220 Flavonoid UFGT high pass UFGT__00002__sp_Q5UL10_UFOG2_FRAAN
Aalp08G0014650 Flavonoid UFGT medium pass UFGT__00002__sp_Q5UL10_UFOG2_FRAAN
Aalp08G0017200 Flavonoid UFGT high pass UFGT__00003__sp_Q66PF5_UFOG1_FRAAN
Aalp08G0020270 Flavonoid UFGT high pass UFGT__00001__sp_P51094_UFOG_VITVI
Aalp08G0020280 Flavonoid UFGT high pass UFGT__00001__sp_P51094_UFOG_VITVI
Aalp08G0035590 Flavonoid UFGT high pass UFGT__00005__sp_Q9LVW3_AXYLT_ARATH
Aalp08G0035630 Flavonoid UFGT high pass UFGT__00005__sp_Q9LVW3_AXYLT_ARATH
Aalp08G0035640 Flavonoid UFGT medium pass UFGT__00005__sp_Q9LVW3_AXYLT_ARATH
Aalp08G0042910 Flavonoid UFGT high pass UFGT__00004__sp_Q96493_UFOG_GENTR
Aalp08G0042920 Flavonoid UFGT high pass UFGT__00002__sp_Q5UL10_UFOG2_FRAAN
Aalp08G0042930 Flavonoid UFGT medium pass UFGT__00004__sp_Q96493_UFOG_GENTR
Aalp08G0056740 Flavonoid UFGT high pass UFGT__00005__sp_Q9LVW3_AXYLT_ARATH
Aalp08G0058560 Flavonoid UFGT medium pass UFGT__00001__sp_P51094_UFOG_VITVI
Aalpscaffold_1140000230 Flavonoid UFGT medium pass UFGT__00001__sp_P51094_UFOG_VITVI
Aalpscaffold_1680003080 Flavonoid UFGT high pass UFGT__00002__sp_Q5UL10_UFOG2_FRAAN
Aalpscaffold_1680003090 Flavonoid UFGT high pass UFGT__00002__sp_Q5UL10_UFOG2_FRAAN
Aalp01G0027020 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Aalp01G0027030 Phenylpropanoid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Aalp01G0027040 Phenylpropanoid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Aalp01G0027050 Phenylpropanoid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Aalp01G0027060 Phenylpropanoid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Aalp01G0027070 Phenylpropanoid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Aalp01G0027080 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Aalp01G0027130 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Aalp01G0028070 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Aalp01G0038600 Phenylpropanoid 4CL low borderline 4CL__00017__sp_Q9S725_4CL2_ARATH
Aalp02G0000420 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Aalp02G0002500 Phenylpropanoid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
Aalp02G0010450 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Aalp02G0010490 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Aalp02G0010500 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Aalp02G0017310 Phenylpropanoid 4CL medium pass 4CL__00018__sp_Q9S777_4CL3_ARATH
Aalp02G0026340 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Aalp02G0026700 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Aalp02G0027700 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Aalp02G0028100 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Aalp03G0006210 Phenylpropanoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Aalp03G0019630 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Aalp03G0024270 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Aalp03G0026760 Phenylpropanoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
Aalp03G0030510 Phenylpropanoid 4CL medium pass 4CL__00017__sp_Q9S725_4CL2_ARATH
Aalp03G0030520 Phenylpropanoid 4CL medium pass 4CL__00015__sp_Q9LU36_4CL4_ARATH
Aalp03G0036040 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Aalp04G0005570 Phenylpropanoid 4CL medium pass 4CL__00007__sp_Q42524_4CL1_ARATH
Aalp04G0008020 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Aalp04G0008040 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Aalp04G0014460 Phenylpropanoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH