Armoracia rusticana (armoracia_rusticana)
Imported from atlas release summary for Armoracia rusticana.
1929
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1929
Candidate Genes
BAHD
6.47%
C3'H/CYP98A
6.12%
C4H
6.1%
POD
4.55%
4CL
4.53%
CYP76
4.03%
IFS
3.62%
UGT
3.39%
Other Families
61.19%
More Families (96)
7DLGT
144
2.98%
UFGT
142
2.94%
NMT
137
2.83%
T3O
132
2.73%
F3H
127
2.63%
DWF4/CYP90B1
120
2.48%
BR6OX2/CYP85A2
108
2.23%
STR
94
1.94%
F3'H/CYP75B
92
1.9%
CODM/T6ODM
87
1.8%
SMT1/SMT2/SMT3
75
1.55%
SGD
74
1.53%
H6H
67
1.39%
CSE
63
1.3%
CYP71
63
1.3%
IFR
59
1.22%
CAD
54
1.12%
G8O/G8H
52
1.08%
TRI/TRII
51
1.05%
T16H
50
1.03%
LAC
45
0.93%
IO
43
0.89%
TAT
42
0.87%
CAS
42
0.87%
BBE
40
0.83%
COMT
39
0.81%
FNS
38
0.79%
GS
37
0.76%
CCR
35
0.72%
ANR
32
0.66%
PYKS
31
0.64%
LAMT
31
0.64%
RAS
31
0.64%
SLS
30
0.62%
F3'5'H/CYP75A
29
0.6%
CYP90D1
27
0.56%
HCT
25
0.52%
PAL
24
0.5%
F5H/CYP84A
23
0.48%
CPD/CYP90A1
23
0.48%
BR6OX1/CYP85A1
22
0.45%
7DLH
21
0.43%
8HGO
20
0.41%
ANS/LDOX
20
0.41%
SQE
20
0.41%
CYP51G1
20
0.41%
NCS
18
0.37%
16OMT
18
0.37%
TPS
17
0.35%
GES
16
0.33%
DFR
16
0.33%
CPR
14
0.29%
FPPS
14
0.29%
COR
13
0.27%
MPO
13
0.27%
GGPPS
13
0.27%
PMT
12
0.25%
CCoAOMT
12
0.25%
AACT
11
0.23%
CNMT
10
0.21%
SMO1/SMO2
10
0.21%
CYP80B1
9
0.19%
CHS
9
0.19%
DET2
9
0.19%
ROT3/CYP90C1
9
0.19%
MVD
9
0.19%
MCT/IspD
9
0.19%
CYP719
8
0.17%
CHI
8
0.17%
CYP80F1
7
0.14%
DXS
7
0.14%
XMT_MXMT_DXMT
6
0.12%
ISY
5
0.1%
DWF7
5
0.1%
SQS/FDFT1
5
0.1%
DWF1
5
0.1%
HDS/IspG
5
0.1%
PMK
5
0.1%
MVK
5
0.1%
CPI1
4
0.08%
HMGR
4
0.08%
IDI
4
0.08%
TDC
3
0.06%
ADC
3
0.06%
FLS
3
0.06%
HPPR
3
0.06%
DWF5
3
0.06%
MDS/IspF
3
0.06%
HDR/IspH
3
0.06%
DXR
3
0.06%
TYDC_DDC
2
0.04%
FK
2
0.04%
HYD1
2
0.04%
CMK/IspE
2
0.04%
HMGS
2
0.04%
6OMT_4OMT_SOMT
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 551 | 21 | BAHD (247) | View species results |
| Phenylpropanoid pathway | 445 | 12 | POD (205) | View species results |
| Alkaloid pathway | 397 | 19 | NMT (81) | View species results |
| Flavonoid pathway | 231 | 10 | UFGT (131) | View species results |
| Rosmarinic acid pathway | 173 | 7 | C4H (65) | View species results |
| Steroid pathway | 132 | 14 | SMT1/SMT2/SMT3 (46) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1849 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 369 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SQE
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| armoracia_rusticana_Arr15036 | Steroid | SQE | medium | pass | SQE__00003__sp_O81000_ERG15_ARATH |
| armoracia_rusticana_Arr15037 | Steroid | SQE | medium | pass | SQE__00004__sp_Q8VYH2_ERG16_ARATH |
| armoracia_rusticana_Arr17873 | Steroid | SQE | medium | pass | SQE__00003__sp_O81000_ERG15_ARATH |
| armoracia_rusticana_Arr18516 | Steroid | SQE | medium | pass | SQE__00005__sp_Q9SM02_ERG14_ARATH |
| armoracia_rusticana_Arr24749 | Steroid | SQE | medium | pass | SQE__00003__sp_O81000_ERG15_ARATH |
| armoracia_rusticana_Arr24750 | Steroid | SQE | medium | pass | SQE__00003__sp_O81000_ERG15_ARATH |
| armoracia_rusticana_Arr25117 | Steroid | SQE | medium | pass | SQE__00005__sp_Q9SM02_ERG14_ARATH |
| armoracia_rusticana_Arr28026 | Steroid | SQE | medium | pass | SQE__00004__sp_Q8VYH2_ERG16_ARATH |
| armoracia_rusticana_Arr31140 | Steroid | SQE | medium | pass | SQE__00004__sp_Q8VYH2_ERG16_ARATH |
| armoracia_rusticana_Arr33028 | Steroid | SQE | low | borderline | SQE__00004__sp_Q8VYH2_ERG16_ARATH |
| armoracia_rusticana_Arr37964 | Steroid | SQE | medium | pass | SQE__00005__sp_Q9SM02_ERG14_ARATH |
| armoracia_rusticana_Arr37965 | Steroid | SQE | medium | pass | SQE__00003__sp_O81000_ERG15_ARATH |
| armoracia_rusticana_Arr37966 | Steroid | SQE | medium | pass | SQE__00004__sp_Q8VYH2_ERG16_ARATH |
| armoracia_rusticana_Arr37967 | Steroid | SQE | medium | pass | SQE__00005__sp_Q9SM02_ERG14_ARATH |
| armoracia_rusticana_Arr37970 | Steroid | SQE | medium | pass | SQE__00004__sp_Q8VYH2_ERG16_ARATH |
| armoracia_rusticana_Arr9139 | Steroid | SQE | medium | pass | SQE__00005__sp_Q9SM02_ERG14_ARATH |
| armoracia_rusticana_Arr9140 | Steroid | SQE | medium | pass | SQE__00005__sp_Q9SM02_ERG14_ARATH |
| armoracia_rusticana_Arr9141 | Steroid | SQE | medium | pass | SQE__00001__sp_B7TWW5_SQE2_PANGI |
| armoracia_rusticana_Arr9142 | Steroid | SQE | medium | pass | SQE__00005__sp_Q9SM02_ERG14_ARATH |
| armoracia_rusticana_Arr9143 | Steroid | SQE | medium | pass | SQE__00004__sp_Q8VYH2_ERG16_ARATH |