Avena atlantica (avena_atlantica)
Imported from atlas release summary for Avena atlantica.
2509
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2509
Candidate Genes
C4H
6.98%
C3'H/CYP98A
6.84%
BAHD
5.48%
POD
4.18%
UGT
4.11%
CYP76
4.07%
7DLGT
3.92%
UFGT
3.86%
Other Families
60.56%
More Families (97)
T3O
239
3.77%
IFS
213
3.36%
BR6OX2/CYP85A2
178
2.8%
F3'H/CYP75B
171
2.69%
4CL
162
2.55%
DWF4/CYP90B1
134
2.11%
F3H
120
1.89%
PYKS
118
1.86%
CYP71
104
1.64%
NMT
92
1.45%
STR
89
1.4%
SMT1/SMT2/SMT3
86
1.36%
TPS
84
1.32%
CAD
83
1.31%
PMT
80
1.26%
GES
73
1.15%
CODM/T6ODM
67
1.06%
COMT
67
1.06%
CAS
66
1.04%
H6H
64
1.01%
RAS
61
0.96%
PAL
60
0.95%
TRI/TRII
59
0.93%
SGD
59
0.93%
HCT
58
0.91%
G8O/G8H
57
0.9%
FNS
54
0.85%
CSE
53
0.84%
16OMT
52
0.82%
T16H
51
0.8%
SLS
51
0.8%
CYP51G1
48
0.76%
ANR
45
0.71%
CHS
43
0.68%
LAC
40
0.63%
GS
38
0.6%
CYP90D1
36
0.57%
F3'5'H/CYP75A
35
0.55%
IFR
35
0.55%
CCR
35
0.55%
IO
34
0.54%
NCS
32
0.5%
BBE
32
0.5%
BR6OX1/CYP85A1
29
0.46%
LAMT
28
0.44%
F5H/CYP84A
27
0.43%
CNMT
26
0.41%
AACT
20
0.32%
8HGO
19
0.3%
CYP719
18
0.28%
TYDC_DDC
17
0.27%
CPD/CYP90A1
17
0.27%
FPPS
17
0.27%
ANS/LDOX
15
0.24%
CYP80B1
14
0.22%
7DLH
13
0.2%
TAT
13
0.2%
CYP80F1
12
0.19%
COR
12
0.19%
DFR
11
0.17%
CPR
11
0.17%
SMO1/SMO2
11
0.17%
CCoAOMT
10
0.16%
HPPR
10
0.16%
MVK
9
0.14%
XMT_MXMT_DXMT
8
0.13%
GGPPS
8
0.13%
ADC
7
0.11%
FLS
7
0.11%
ROT3/CYP90C1
7
0.11%
MPO
6
0.09%
6OMT_4OMT_SOMT
6
0.09%
HMGR
6
0.09%
DWF1
5
0.08%
SQS/FDFT1
5
0.08%
IDI
5
0.08%
HMGS
5
0.08%
TDC
4
0.06%
ISY
4
0.06%
DET2
4
0.06%
MCT/IspD
4
0.06%
MVD
4
0.06%
ODC
3
0.05%
SQE
3
0.05%
HYD1
3
0.05%
DXS
3
0.05%
MDS/IspF
3
0.05%
HDS/IspG
3
0.05%
CHI
2
0.03%
DWF7
2
0.03%
DXR
2
0.03%
CMK/IspE
2
0.03%
FK
1
0.02%
DWF5
1
0.02%
CPI1
1
0.02%
PMK
1
0.02%
HDR/IspH
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 729 | 20 | BAHD (263) | View species results |
| Alkaloid pathway | 589 | 23 | 7DLGT (118) | View species results |
| Phenylpropanoid pathway | 488 | 11 | POD (247) | View species results |
| Flavonoid pathway | 372 | 12 | UFGT (238) | View species results |
| Rosmarinic acid pathway | 217 | 7 | C4H (114) | View species results |
| Steroid pathway | 114 | 12 | SMT1/SMT2/SMT3 (53) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2623 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 467 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 8HGO
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| AatlScoFOjO_1702_23380073570.1 | Alkaloid | 8HGO | medium | borderline |
| AatlScoFOjO_1702_23380088160.1 | Alkaloid | 8HGO | low | borderline |
| AatlScoFOjO_1702_23380125490.1 | Alkaloid | 8HGO | low | borderline |
| AatlScoFOjO_1760_23990142200.1 | Alkaloid | 8HGO | medium | borderline |
| AatlScoFOjO_1760_23990158770.1 | Alkaloid | 8HGO | medium | borderline |
| AatlScoFOjO_1760_23990168650.1 | Alkaloid | 8HGO | medium | borderline |
| AatlScoFOjO_1760_23990182730.1 | Alkaloid | 8HGO | medium | borderline |
| AatlScoFOjO_2050_27120212690.1 | Alkaloid | 8HGO | medium | borderline |
| AatlScoFOjO_2050_27120212700.1 | Alkaloid | 8HGO | medium | borderline |
| AatlScoFOjO_2050_27120212710.1 | Alkaloid | 8HGO | medium | borderline |
| AatlScoFOjO_324_4490320840.1 | Alkaloid | 8HGO | low | borderline |
| AatlScoFOjO_324_4490349740.1 | Alkaloid | 8HGO | medium | pass |
| AatlScoFOjO_350_4830399750.1 | Alkaloid | 8HGO | low | borderline |
| AatlScoFOjO_350_4830412390.1 | Alkaloid | 8HGO | medium | borderline |
| AatlScoFOjO_350_4830412430.1 | Alkaloid | 8HGO | medium | borderline |
| AatlScoFOjO_350_4830412460.1 | Alkaloid | 8HGO | medium | borderline |
| AatlScoFOjO_367_5040468810.1 | Alkaloid | 8HGO | medium | borderline |
| AatlScoFOjO_448_6030485630.1 | Alkaloid | 8HGO | medium | borderline |
| AatlScoFOjO_448_6030486880.1 | Alkaloid | 8HGO | medium | borderline |