PlantSME Plant secondary metabolism enzyme database

Avena atlantica (avena_atlantica)

Imported from atlas release summary for Avena atlantica.

2509
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 729 20 BAHD (263) View species results
Alkaloid pathway 589 23 7DLGT (118) View species results
Phenylpropanoid pathway 488 11 POD (247) View species results
Flavonoid pathway 372 12 UFGT (238) View species results
Rosmarinic acid pathway 217 7 C4H (114) View species results
Steroid pathway 114 12 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 467 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status
AatlScoFOjO_1310_17880002970.1 Alkaloid TYDC_DDC medium borderline
AatlScoFOjO_1310_17880022570.1 Alkaloid TYDC_DDC medium borderline
AatlScoFOjO_1310_17880049700.1 Alkaloid TYDC_DDC medium borderline
AatlScoFOjO_1310_17880056530.1 Alkaloid TYDC_DDC high pass
AatlScoFOjO_1702_23380108160.1 Alkaloid TYDC_DDC medium borderline
AatlScoFOjO_1702_23380122010.1 Alkaloid TYDC_DDC medium borderline
AatlScoFOjO_1760_23990147330.1 Alkaloid TYDC_DDC low borderline
AatlScoFOjO_2069_27320287030.1 Alkaloid TYDC_DDC low borderline
AatlScoFOjO_2069_27320306180.1 Alkaloid TYDC_DDC low borderline
AatlScoFOjO_2069_27320306190.1 Alkaloid TYDC_DDC medium borderline
AatlScoFOjO_2069_27320306200.1 Alkaloid TYDC_DDC medium borderline
AatlScoFOjO_324_4490347680.1 Alkaloid TYDC_DDC medium borderline
AatlScoFOjO_324_4490347700.1 Alkaloid TYDC_DDC medium borderline
AatlScoFOjO_350_4830390540.1 Alkaloid TYDC_DDC medium borderline
AatlScoFOjO_350_4830390550.1 Alkaloid TYDC_DDC medium borderline
AatlScoFOjO_350_4830442390.1 Alkaloid TYDC_DDC medium borderline
AatlScoFOjO_411_5600478020.1 Alkaloid TYDC_DDC low borderline