PlantSME Plant secondary metabolism enzyme database

Avena atlantica (avena_atlantica)

Imported from atlas release summary for Avena atlantica.

2509
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 729 20 BAHD (263) View species results
Alkaloid pathway 589 23 7DLGT (118) View species results
Phenylpropanoid pathway 488 11 POD (247) View species results
Flavonoid pathway 372 12 UFGT (238) View species results
Rosmarinic acid pathway 217 7 C4H (114) View species results
Steroid pathway 114 12 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 467 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
AatlScoFOjO_1310_17880010630.1 Alkaloid GS high pass
AatlScoFOjO_1310_17880024010.1 Alkaloid GS low borderline
AatlScoFOjO_1310_17880024020.1 Alkaloid GS low borderline
AatlScoFOjO_1310_17880026020.1 Alkaloid GS low borderline
AatlScoFOjO_1310_17880032680.1 Alkaloid GS low borderline
AatlScoFOjO_1310_17880032720.1 Alkaloid GS low borderline
AatlScoFOjO_1310_17880052980.1 Alkaloid GS high pass
AatlScoFOjO_1702_23380116210.1 Alkaloid GS low borderline
AatlScoFOjO_1702_23380118160.1 Alkaloid GS low borderline
AatlScoFOjO_1760_23990169790.1 Alkaloid GS low borderline
AatlScoFOjO_1760_23990169820.1 Alkaloid GS low borderline
AatlScoFOjO_1760_23990177670.1 Alkaloid GS low borderline
AatlScoFOjO_2050_27120200480.1 Alkaloid GS low borderline
AatlScoFOjO_2050_27120232330.1 Alkaloid GS high pass
AatlScoFOjO_2069_27320298660.1 Alkaloid GS low borderline
AatlScoFOjO_2069_27320310940.1 Alkaloid GS medium pass
AatlScoFOjO_2069_27320310970.1 Alkaloid GS high pass
AatlScoFOjO_2069_27320311310.1 Alkaloid GS high pass
AatlScoFOjO_2069_27320313700.1 Alkaloid GS low borderline
AatlScoFOjO_2069_27320313830.1 Alkaloid GS low borderline
AatlScoFOjO_324_4490348270.1 Alkaloid GS high pass
AatlScoFOjO_324_4490363780.1 Alkaloid GS medium pass
AatlScoFOjO_350_4830445820.1 Alkaloid GS high pass
AatlScoFOjO_350_4830445830.1 Alkaloid GS high pass
AatlScoFOjO_350_4830454470.1 Alkaloid GS low borderline
AatlScoFOjO_350_4830454510.1 Alkaloid GS low borderline
AatlScoFOjO_367_5040466220.1 Alkaloid GS low borderline
AatlScoFOjO_367_5040466970.1 Alkaloid GS medium pass
AatlScoFOjO_367_5040467570.1 Alkaloid GS high pass
AatlScoFOjO_367_5040467610.1 Alkaloid GS low borderline
AatlScoFOjO_367_5040469370.1 Alkaloid GS low borderline
AatlScoFOjO_367_5040469740.1 Alkaloid GS high pass
AatlScoFOjO_367_5040470470.1 Alkaloid GS medium pass
AatlScoFOjO_411_5600476410.1 Alkaloid GS medium pass
AatlScoFOjO_411_5600481130.1 Alkaloid GS low borderline
AatlScoFOjO_411_5600481140.1 Alkaloid GS low borderline
AatlScoFOjO_448_6030484960.1 Alkaloid GS medium pass
AatlScoFOjO_448_6030485500.1 Alkaloid GS medium pass