PlantSME Plant secondary metabolism enzyme database

Avena atlantica (avena_atlantica)

Imported from atlas release summary for Avena atlantica.

2509
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 729 20 BAHD (263) View species results
Alkaloid pathway 589 23 7DLGT (118) View species results
Phenylpropanoid pathway 488 11 POD (247) View species results
Flavonoid pathway 372 12 UFGT (238) View species results
Rosmarinic acid pathway 217 7 C4H (114) View species results
Steroid pathway 114 12 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 467 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status
AatlScoFOjO_1310_17880006260.1 Alkaloid NCS medium borderline
AatlScoFOjO_1310_17880006270.1 Alkaloid NCS medium borderline
AatlScoFOjO_1310_17880012980.1 Alkaloid NCS medium pass
AatlScoFOjO_1310_17880019360.1 Alkaloid NCS medium borderline
AatlScoFOjO_1310_17880023610.1 Alkaloid NCS medium borderline
AatlScoFOjO_1310_17880055950.1 Alkaloid NCS medium borderline
AatlScoFOjO_1702_23380092140.1 Alkaloid NCS medium borderline
AatlScoFOjO_1702_23380105860.1 Alkaloid NCS medium borderline
AatlScoFOjO_1702_23380127730.1 Alkaloid NCS medium pass
AatlScoFOjO_1760_23990157530.1 Alkaloid NCS medium pass
AatlScoFOjO_1760_23990180280.1 Alkaloid NCS medium pass
AatlScoFOjO_1760_23990180290.1 Alkaloid NCS medium pass
AatlScoFOjO_2050_27120200670.1 Alkaloid NCS medium borderline
AatlScoFOjO_2050_27120201010.1 Alkaloid NCS medium borderline
AatlScoFOjO_2050_27120201720.1 Alkaloid NCS medium borderline
AatlScoFOjO_2069_27320274570.1 Alkaloid NCS medium borderline
AatlScoFOjO_2069_27320310850.1 Alkaloid NCS medium borderline
AatlScoFOjO_2069_27320310860.1 Alkaloid NCS medium borderline
AatlScoFOjO_2069_27320314320.1 Alkaloid NCS medium borderline
AatlScoFOjO_2069_27320314330.1 Alkaloid NCS medium borderline
AatlScoFOjO_324_4490324260.1 Alkaloid NCS medium borderline
AatlScoFOjO_324_4490340390.1 Alkaloid NCS medium borderline
AatlScoFOjO_324_4490344700.1 Alkaloid NCS medium borderline
AatlScoFOjO_324_4490378860.1 Alkaloid NCS medium borderline
AatlScoFOjO_324_4490378990.1 Alkaloid NCS medium borderline
AatlScoFOjO_324_4490379060.1 Alkaloid NCS medium borderline
AatlScoFOjO_324_4490384610.1 Alkaloid NCS medium borderline
AatlScoFOjO_324_4490388210.1 Alkaloid NCS medium pass
AatlScoFOjO_350_4830410900.1 Alkaloid NCS medium borderline
AatlScoFOjO_350_4830428730.1 Alkaloid NCS medium borderline
AatlScoFOjO_350_4830433950.1 Alkaloid NCS medium borderline
AatlScoFOjO_350_4830460160.1 Alkaloid NCS low borderline