PlantSME Plant secondary metabolism enzyme database

Avena atlantica (avena_atlantica)

Imported from atlas release summary for Avena atlantica.

2509
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 729 20 BAHD (263) View species results
Alkaloid pathway 589 23 7DLGT (118) View species results
Phenylpropanoid pathway 488 11 POD (247) View species results
Flavonoid pathway 372 12 UFGT (238) View species results
Rosmarinic acid pathway 217 7 C4H (114) View species results
Steroid pathway 114 12 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 467 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CODM/T6ODM
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Gene Pathway Family Confidence Status
AatlScoFOjO_324_4490386280.1 Alkaloid CODM/T6ODM medium borderline
AatlScoFOjO_324_4490388220.1 Alkaloid CODM/T6ODM medium borderline
AatlScoFOjO_324_4490388360.1 Alkaloid CODM/T6ODM medium borderline
AatlScoFOjO_324_4490388370.1 Alkaloid CODM/T6ODM medium borderline
AatlScoFOjO_350_4830415820.1 Alkaloid CODM/T6ODM medium borderline
AatlScoFOjO_350_4830415840.1 Alkaloid CODM/T6ODM medium borderline
AatlScoFOjO_350_4830418060.1 Alkaloid CODM/T6ODM medium borderline
AatlScoFOjO_350_4830441850.1 Alkaloid CODM/T6ODM medium borderline
AatlScoFOjO_350_4830446600.1 Alkaloid CODM/T6ODM medium borderline
AatlScoFOjO_350_4830446610.1 Alkaloid CODM/T6ODM medium borderline
AatlScoFOjO_350_4830446620.1 Alkaloid CODM/T6ODM medium borderline
AatlScoFOjO_350_4830446770.1 Alkaloid CODM/T6ODM medium borderline
AatlScoFOjO_350_4830446800.1 Alkaloid CODM/T6ODM medium borderline
AatlScoFOjO_350_4830446810.1 Alkaloid CODM/T6ODM medium borderline
AatlScoFOjO_350_4830464930.1 Alkaloid CODM/T6ODM medium borderline
AatlScoFOjO_382_5220474730.1 Alkaloid CODM/T6ODM low borderline
AatlScoFOjO_577_7480491170.1 Alkaloid CODM/T6ODM medium borderline